Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00430 ATGACTGATTTTTCAGCTTTCCGAACGGGCTATCTCAAAAGGAAAATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCCTCCACTATCCAAGCTAGGAAATTGAGAATCCCGGAAAGTTTCCTCCGGATGATCAGGGATGATCTTTCTGCAGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGCTGATAATAAGTTTTGGTTTGAAGATGGGTGGCATGGATTTCTTGAGCATTACTCGATAAGGGTCGGGTTTTTGTTAGTATTCAGATATGAGGGAAACTCATCATTCTGTATTTTTATCTTTAATCTTAATACATCTGAGATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCATTCAAAACCGAATATTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGCCTTTGAACTCAGGTTTTTTACGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAATCCAAATATTTACCTACTCGAGATATCGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAGTCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCTCACAGAATTAAAAAAAGTGGAGGCAAGAAGCGGAAACTTGATTCTAGCGAGCATCGTCCGTCTGCTCATAGTGAAGATTTCGGTGACAATCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTAACAGCAGAAGAAAGAGAAAGAGTTGTCAATGGTGCAAAAGCGTTCGAGCCCGCTAATCCCTTCTGTAGGGTCGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCCGATGGGAGACAGTGGCCGGTCCGGTGTCTTTATAAAGTTGGTCGGGCCAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTCAGGGTGCGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGACACTAGACGAATGGTAAACCCAAATCCTCCCAGCATGATGAATCCACACTCGCTACAAAGTGCTAGCCAAATTAAGCTGATCAGAAACTAA 1233 42.42 MTDFSAFRTGYLKRKMPRPYFHKLVLSSTIQARKLRIPESFLRMIRDDLSAVATLTVPDGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCIFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEAIPSNQPLNSGFLRNKLFGDEWNLHQSKSASTLQSKYLPTRDIGVQFSAVEVKKSADEVRFQNLGDDAHRIKKSGGKKRKLDSSEHRPSAHSEDFGDNRFRFYESASARKRTVTAEERERVVNGAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRVREIVLKVTMFRVIEDTRRMVNPNPPSMMNPHSLQSASQIKLIRN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2178446 2181747 - CmaCh02G004300.1 Cma02g00430 288181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00430 410 SMART B3_2 21 113 IPR003340 GO:0003677
Cma02g00430 410 SMART B3_2 284 379 IPR003340 GO:0003677
Cma02g00430 410 Gene3D - 261 381 IPR015300 -
Cma02g00430 410 PANTHER B3 DOMAIN-CONTAINING 228 391 - -
Cma02g00430 410 PANTHER B3 DOMAIN-CONTAINING 16 167 - -
Cma02g00430 410 Gene3D - 13 114 IPR015300 -
Cma02g00430 410 SUPERFAMILY DNA-binding pseudobarrel domain 279 380 IPR015300 -
Cma02g00430 410 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cma02g00430 410 CDD B3_DNA 282 377 IPR003340 GO:0003677
Cma02g00430 410 Pfam B3 DNA binding domain 287 377 IPR003340 GO:0003677
Cma02g00430 410 Pfam B3 DNA binding domain 22 109 IPR003340 GO:0003677
Cma02g00430 410 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 16 167 - -
Cma02g00430 410 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 228 391 - -
Cma02g00430 410 CDD B3_DNA 19 111 IPR003340 GO:0003677
Cma02g00430 410 ProSiteProfiles B3 DNA-binding domain profile. 284 379 IPR003340 GO:0003677
Cma02g00430 410 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Cma02g00430 410 MobiDBLite consensus disorder prediction 216 244 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00430 Cma20g00883 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00430 Cma-Chr2:2178446 Cma20g00883 Cma-Chr20:4245137 0 dispersed
Cma02g00429 Cma-Chr2:2171108 Cma02g00430 Cma-Chr2:2178446 2.50E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34436 PF02362 B3 3.40E-18 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00430 - - csv:101213446 742.651