Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00438 ATGGCGGAAGCGAATTCGGAAGAGAAGGTGAATGAGAATCCTGAAATGGAGGTCAAAGAAGCTGTGAATGGCGATGGTGTTGGTAGTAGTAATAGCAATGGTAATCTTTCCTTCAAATTTAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCCTATTTTCATTTTCTTGGTGGGGCTCCTGCAACTTCAGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCCAATCCCACCATTCCTCTCCCAAATTTCTCTAAGAACGCCCGTTCGGAGGATATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGTTTAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAACATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTTGTTAGCGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCCTTTACGGACAAGGACAAAGAGGAATTGCTGTCTCGTACAGTCGTTGTGGAGAATTTGCCTGACAATCACTCGCACCACAACCTCGAGAAAATATTTAGCGTCATTGGGAGTGTGAAGACGATCCGAATCTGTCATCCCCCGGAATCAAATCCCTGCTGCTCTAAAGGTGAATTATTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACCGTAGAGTTGGCTGACAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGAGTAAGGTTATTACTCAGACGCTCGCCAAAATCAGTTCTGAAGACTCGAAAATCAGAATTTGAAAGTATTCTGGATGAAGATGATTCACCATCTCCTGTATCTATTGAGCAAGAATCTCCTCAGTCAAATATTGCTGAACTGATTACTGACTTCAGTTCTGAGGAGAACTCTACATCATCTAAAAAGGGCTGGGGTCGAGGCCGTGGGAAGGGCCGTGGACGAGTTCATAACCATCTCGATCGTAGCTATAGCTTACCAGTTACAGCTATGCAATCGAGTAGTCAGATTCTATGTGAAGCATCTTCAAAACTCACTTCGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGTTTCACCATGGGACGAGGCAAGCCATTAAATTCTAAATCTGTATTTTGA 1245 43.29 MAEANSEEKVNENPEMEVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELADRAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELITDFSSEENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSVF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2230180 2233648 + CmaCh02G004380.1 Cma02g00438 288189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00438 414 PANTHER LA-RELATED PROTEIN 6C 1 409 - -
Cma02g00438 414 Pfam La domain 112 169 IPR006630 -
Cma02g00438 414 Gene3D - 104 191 IPR036388 -
Cma02g00438 414 SMART la 106 186 IPR006630 -
Cma02g00438 414 MobiDBLite consensus disorder prediction 298 364 - -
Cma02g00438 414 PANTHER LUPUS LA PROTEIN-RELATED 1 409 IPR045180 -
Cma02g00438 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 290 IPR000504 GO:0003723
Cma02g00438 414 MobiDBLite consensus disorder prediction 1 28 - -
Cma02g00438 414 SUPERFAMILY Winged helix DNA-binding domain 104 189 IPR036390 -
Cma02g00438 414 MobiDBLite consensus disorder prediction 1 19 - -
Cma02g00438 414 Gene3D - 192 293 IPR012677 -
Cma02g00438 414 SMART rrm1_1 201 284 IPR000504 GO:0003723
Cma02g00438 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 273 IPR000504 GO:0003723
Cma02g00438 414 MobiDBLite consensus disorder prediction 315 345 - -
Cma02g00438 414 MobiDBLite consensus disorder prediction 380 414 - -
Cma02g00438 414 ProSiteProfiles La-type HTH domain profile. 102 193 IPR006630 -
Cma02g00438 414 PRINTS Lupus La protein signature 115 132 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cma02g00438 414 PRINTS Lupus La protein signature 141 156 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cma02g00438 414 PRINTS Lupus La protein signature 172 185 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cma02g00438 414 PRINTS Lupus La protein signature 194 210 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cma02g00438 414 SUPERFAMILY RNA-binding domain, RBD 186 293 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00438 K15191 LARP7; La-related protein 7 - csv:101217948 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00438 Cma-Chr2:2230180 Cma02g00458 Cma-Chr2:2398563 0 dispersed
Cma02g00438 Cma-Chr2:2230180 Cma03g01393 Cma-Chr3:8793120 3.95E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00438 Cma_Chr02 FPKM 8.329477 7.526605 5.20781 5.413724 4.62005 3.950795 4.28412 6.849673 6.540394 7.596319