Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00440 ATGTCAACTCTAAGCTCGGCCGACCCGGGTTGGTTTAGGGCTCGTAATACCACTTTTCTTTTCAGTTCTAGGCATAAACGTCCCCCGTTCCCGCCACCATCATCACGATGTTTGCCACAACCACCATGGAGACGTCTGCCACCGTCACCACCACCATCACAACCACGAAAACCTCGAACACCACCATCACGACCACGACAACCTCGGACACCACCATCACGACCACGACAACCTCGAACACCACCACCACGAAGGTTGCCACCATCCCCACCACCATCACGACGGCCTCGAACACCGCCATTGCCGACCCCACAAAATCCAAGAAAGATTATAGTGGGTGGTTCTAAATATTGGCGTCTTGGCTTTGACTATAATGATTGGATACTTAAGAACGGTCCATTTTATCTGAACGATATTCTAGTGTTCAAATACGATCGTCCAAATAGTTCAACTCCCCCTCATAATGTTTATTTGCTACCAAACATGCAAAGCTTCAACAAGTGTGATTTTAGAAGGGCTAAATTGGTGGCAAATTTAACACAAGGAAGTGGAAATGGGTTTAATTTTGTTCTTAAACAACAAAAAGCTTACTACTTTGCTTGTGGTGAAGGCATTGGCTTCCATTGCAACATTGGATCCATGAAGTTCTCTATAACCCCACAATCAAGGCGTCTACCATCACCGCTACCACCATCACGACCGCCACGAATACCTCCGCCACGACATGTGCCACCGCTGTTTCCACCACCACCATCAAAACGACCACGAATACCTCCACCACGACAGGTGCCACCACCATCAAAACGACCACGAATACCTCCACCACGACAGGTGCCACCACCGTCACCACCACCACCATCAAAACGACCACGAATACCTCCACCACGACCAATGCCACCACCATTATCTCCACCATCACTACCTCCATCACCATCACCATCCCCATCCCCATCCCCACCTCCATCACCGACTCCACAAATTCCAAGAAAAATCATCGTTGGTGGATCAGAACGATGGCGTCTTGGCTCTGACTATAATGATTGGGCACTTAAAAACGGACCCTTTTATCTAAACGATATTCTAGTATTCAAATACGATCCTTCCCATAGCGTCTATTTGCTACCAAACATGCAAAGCTTGGTGGATTGTGACTTTGGAACAGCCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGCTTTGAGTTTGTACTCAACCAGCAAAATCCTTACTACTTTGCTTGCGGTGAAGGCAATGGCTTCCATTGCAAACTTGGATCCATGAAGTTCTCTGTAACACCAATAGCTCAAGCTTGA 1320 47.27 MSTLSSADPGWFRARNTTFLFSSRHKRPPFPPPSSRCLPQPPWRRLPPSPPPSQPRKPRTPPSRPRQPRTPPSRPRQPRTPPPRRLPPSPPPSRRPRTPPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYLNDILVFKYDRPNSSTPPHNVYLLPNMQSFNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGIGFHCNIGSMKFSITPQSRRLPSPLPPSRPPRIPPPRHVPPLFPPPPSKRPRIPPPRQVPPPSKRPRIPPPRQVPPPSPPPPSKRPRIPPPRPMPPPLSPPSLPPSPSPSPSPSPPPSPTPQIPRKIIVGGSERWRLGSDYNDWALKNGPFYLNDILVFKYDPSHSVYLLPNMQSLVDCDFGTAKMVANLTQGSGDGFEFVLNQQNPYYFACGEGNGFHCKLGSMKFSVTPIAQA 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2241128 2242767 + CmaCh02G004400.1 Cma02g00440 288191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00440 439 ProSiteProfiles Phytocyanin domain profile. 329 437 IPR003245 GO:0009055
Cma02g00440 439 Gene3D - 107 221 IPR008972 -
Cma02g00440 439 MobiDBLite consensus disorder prediction 220 329 - -
Cma02g00440 439 Gene3D - 329 439 IPR008972 -
Cma02g00440 439 ProSiteProfiles Phytocyanin domain profile. 108 222 IPR003245 GO:0009055
Cma02g00440 439 PANTHER GLYCINE-RICH PROTEIN-LIKE 322 438 - -
Cma02g00440 439 PANTHER GLYCINE-RICH PROTEIN-LIKE 104 223 - -
Cma02g00440 439 PANTHER GLYCINE-RICH PROTEIN-LIKE 322 438 - -
Cma02g00440 439 SUPERFAMILY Cupredoxins 109 220 IPR008972 -
Cma02g00440 439 MobiDBLite consensus disorder prediction 224 327 - -
Cma02g00440 439 MobiDBLite consensus disorder prediction 26 106 - -
Cma02g00440 439 SUPERFAMILY Cupredoxins 329 435 IPR008972 -
Cma02g00440 439 MobiDBLite consensus disorder prediction 21 110 - -
Cma02g00440 439 PANTHER GLYCINE-RICH PROTEIN-LIKE 104 223 - -
Cma02g00440 439 Pfam Plastocyanin-like domain 342 427 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00440 - - - cmos:111451078 251.906
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00440 Cma-Chr2:2241128 Cma04g02961 Cma-Chr4:19461309 1.76E-07 dispersed
Cma02g00440 Cma-Chr2:2241128 Cma20g00889 Cma-Chr20:4274521 1.28E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g462 . . Bda06g01042 . . . . . . . Cma02g00440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00446 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004690 1 1 0 1 1 1 4 0 0 0 1 0 2 0 1 2 0 3 0 1 1 4 0 3 2 1 2 1 2 6 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00440 Cma_Chr02 FPKM 2.817073 2.351518 52.685699 47.158222 1.373927 1.436633 1.576932 0.0 0.0 0.0