Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00443 ATGGCCCAGCCTTCCAACGGTGCTGATCTCAATCCTCAAGCCCCTCACCCTCACCATCAATGGTATCAACAACAACGACAGTATCAGCAGCAATGGATGGCGGTGCAGTACCCTGCCGCCGCCATGGCCATGATGCAACAACAGCAGATGATGATGTATCCTCCTCAGCATTACGTGGCGTATTCTCACCATCCTTATCAACAGCAGCAACATCCACAGCAGCAGCCACCGCCGTCGCAGCAGCAGCAGCAGCAACAGCAGCAACCTCAGTCGCAGCGACCTCGCAGACAGGGGTCAACGGACGACGTTAAGACGCTTTGGATTGGTGACCTTCAGGCCTGGATGGACGAGACCTATCTCCATAACTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTGAAGGTCATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCACATGCAACAGCTGATAAAGTGTTGCAGAACTATAATGGTGCTATGATGCCGAACACAGATCTGCCTTTCCGTCTCAATTGGGCAACCTTTAGTGGAAATGATAGGCGACCGGACACTGGTTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTCTCTAGTAAATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGATTTGTCAGGTTTGGTGATGAAAATGAAAAGTCCAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCTTCACAGGCTTTAGTTCTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGACCACAATCAGATGGCGAGTCGAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGCGATGAAGATCTCAAGCAACCCTTCTCTAAATTTGGTGAGATTGTCTCTGTGAAAATTCCTATTGGAAAGGGATGTGGATTTGTGCAGTTTGCCAACAGAAAAAATGCCGAGGATGCAATACAGGGACTGAATGGAACAGTTATTGGCAAGCAAATTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAGCAAGCAGTGGAGAAGTGATTCTAATAACCAATGGAATGGAGGACGTTATGGAGTCCCAGGCTACGGTGGTGGATACGGTGGTTACTACTCAGTACCACAGCAACAGGACGCAAACACGCAAGCCACAGTTGGCGCAGAGTTAATGGGTCATCTTGCCCCAGCTGCCGCAGTTAATGGCTCATCTTGA 1356 47.42 MAQPSNGADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVAYSHHPYQQQQHPQQQPPPSQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETYLHNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAMMPNTDLPFRLNWATFSGNDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDENEKSRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGPQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGEIVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYSVPQQQDANTQATVGAELMGHLAPAAAVNGSS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2254923 2269709 - CmaCh02G004430.1 Cma02g00443 288194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00443 451 SUPERFAMILY RNA-binding domain, RBD 306 417 IPR035979 GO:0003676
Cma02g00443 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Cma02g00443 451 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 432 - -
Cma02g00443 451 SUPERFAMILY RNA-binding domain, RBD 183 290 IPR035979 GO:0003676
Cma02g00443 451 MobiDBLite consensus disorder prediction 65 102 - -
Cma02g00443 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 387 IPR000504 GO:0003723
Cma02g00443 451 CDD RRM3_NGR1_NAM8_like 314 385 - -
Cma02g00443 451 MobiDBLite consensus disorder prediction 1 23 - -
Cma02g00443 451 CDD RRM2_SECp43_like 196 275 - -
Cma02g00443 451 CDD RRM1_SECp43_like 105 185 - -
Cma02g00443 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 378 IPR000504 GO:0003723
Cma02g00443 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 174 IPR000504 GO:0003723
Cma02g00443 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 269 IPR000504 GO:0003723
Cma02g00443 451 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 432 - -
Cma02g00443 451 SMART rrm1_1 198 272 IPR000504 GO:0003723
Cma02g00443 451 SMART rrm1_1 316 383 IPR000504 GO:0003723
Cma02g00443 451 SMART rrm1_1 105 178 IPR000504 GO:0003723
Cma02g00443 451 MobiDBLite consensus disorder prediction 65 96 - -
Cma02g00443 451 Gene3D - 197 273 IPR012677 -
Cma02g00443 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 276 IPR000504 GO:0003723
Cma02g00443 451 Gene3D - 297 424 IPR012677 -
Cma02g00443 451 Gene3D - 61 196 IPR012677 -
Cma02g00443 451 SUPERFAMILY RNA-binding domain, RBD 67 189 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00443 - - - cmax:111499959 746.888
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00443 Cma20g00892 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00443 Cma-Chr2:2254923 Cma09g00213 Cma-Chr9:904988 3.03E-163 dispersed
Cma12g00518 Cma-Chr12:2676295 Cma02g00443 Cma-Chr2:2254923 1.72E-144 wgd
Cma02g00443 Cma-Chr2:2254923 Cma20g00892 Cma-Chr20:4287687 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00443 Cma_Chr02 FPKM 146.446106 150.071548 89.484192 84.49469 54.728767 61.278683 46.766987 292.616882 297.838715 276.642975