Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00450 ATGGCTACTTCCTCGCATGTGTTTTCAATGTCAAGTCGTCTCCTTTTAGTTGTCATTCTTCTTCTTTACTTCCTTGCTGCCTCTATCGACTCGGTTTCTTTCAAAATCGATCGGTTTAAAACCAATGAAACTGATACTCTTTACCAAGGAGATGCTATGCCATCGGTTGGAGCAGTTGAATTCAACAATGTTGAGTATCTTTGTCGTGTTGGTTGGGCTATCTATAAAGACATTGTTCCAATTTGGGACTCAAAAACAGGAAAATCCACTGATTTCTCCACCCATTTTAGCTTCATTATTGATACCACAATTGTGCCAAATTATGGCAATGGATTAGCTTTCTTCTTAGCTCCACCAGGGTTTCAAATCCCTCCAAACTCCGGTGGTGGGTTTCTTGGCCTTTACAACACAACAAATAGTGATTCAACCCTCAACCAAATTGTTCATGTTGAATTTGATTCTTTCTACAATGAAGAATGGGATCCTCCATCTGAACATGTGGGTATCAACGTTAACTCCATTCATTCTTCGAATTCCACGGGTTGGAATGCTAGTTTACATAGTGGGGATATGGCTGATGTGTGGATCTCCTACAATTCAACCACCAAGAACTTGAGCGTGTCCTGGAAATACCAAAATTCTTCGTCTACTTCCTTTGAAAATACCACCTTGAGCTACCATATTGATCTCACGAAGGTTCTTCCTCAATGGGCTACCGTGGGGTTTTCAGCTGCAACGGGCTTGAATGTAGAGAGACACACATTATTCTCTTGGGAGTTCAATTCAAGCTTGGATTTAGAGCAAGGAAGTGAAGATAACGGGAATAAAGTCGATATAATTGTCGGTGTAACCGTGTCAATAGGAGTATCAATCATCATGGGAAGTGTAGCATTTGTTGTAATTTGGAGATTGAAACAAAAGAAACGAAAATTAGAAGAAGAAAATGGGAACGAGGTGAACTTGACATCGATTAACGATGATTTGGAGAGAGGGGCTGGACCGAGACGGTTTTCTCGCAAGCTTCTCGCCATGGCTACCAACAATTTCTCGAACGAAAGGAAGTTGGGTGAGGGAGGGTTTGGTGCAGTGTATAGAGGATATATTCCTGATCTTGGTTTGACCATCGCGGTGAAGAAGATCTCAAGGGGTTCGAGACAGGGACGAAAAGAATACATAACGGAGGTGAAGATCATTAGTAGGCTTCGCCATCGGAATTTAGTGCAACTTATTGGTTGGTGTCATGATAAAGGTGAGTTCTTGTTAGTTTATGAGTTCATGCATAATGGTAGCCTTGATTCTCACCTCTTTGGAAGGAAAAGCCCTCTTGTGTGGGGTGTGAGGTATAAAATTGCCTTGGGTTTAGCCTCCGCGTTGCTATATCTTCATGAAGAATGGGAGCAATGCGTAGTTCATAGAGATATTAAGTCGAGCAATGTCATGTTGGATTCGAACTTCAATGTCAAGCTTGGAGATTTTGGGCTAGCTCGATTGATGGACCATGAGATGGGTGCGCAGACTACTGGGTTGGTAGGGACTTTGGGGTACTTGGCTCCGGAATACATAAGCACAGGTCGAGCGAGTAAAGAATCAGATGTGTTTAGTTTTGGGGTCGTTGCTTTGGAGATAGCAACAGGAAGGATGTCGAGAAACGCCATGGAAACGGGTTCTCATAAGGGTTTGGTGGAATGGGTTTGGGATCTTTATGGGAATGGAAAGGTTCTTATGGGTGTGGATGAAAAATTGCAAAGTGATTACGATAGAAAACAAATGGAGTGCTTGATGATTGTTGGACTTTGGAGTGCTTATCCGGACCCTAATCTTAGACCTTCAATACGACAAGTGATTCAAGTTCTTAATTTTGAGACGACAATGCCAAGTCTTCCGGATAAAATGCCGGTTGCTGTGTATCATGCTCCTTCTACATCGATGAGCTCAAATGAGCCTCCAATTACGTCAAGTCTTGACATGGGTCGTTGA 1977 42.54 MATSSHVFSMSSRLLLVVILLLYFLAASIDSVSFKIDRFKTNETDTLYQGDAMPSVGAVEFNNVEYLCRVGWAIYKDIVPIWDSKTGKSTDFSTHFSFIIDTTIVPNYGNGLAFFLAPPGFQIPPNSGGGFLGLYNTTNSDSTLNQIVHVEFDSFYNEEWDPPSEHVGINVNSIHSSNSTGWNASLHSGDMADVWISYNSTTKNLSVSWKYQNSSSTSFENTTLSYHIDLTKVLPQWATVGFSAATGLNVERHTLFSWEFNSSLDLEQGSEDNGNKVDIIVGVTVSIGVSIIMGSVAFVVIWRLKQKKRKLEEENGNEVNLTSINDDLERGAGPRRFSRKLLAMATNNFSNERKLGEGGFGAVYRGYIPDLGLTIAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMHNGSLDSHLFGRKSPLVWGVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHEMGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRNAMETGSHKGLVEWVWDLYGNGKVLMGVDEKLQSDYDRKQMECLMIVGLWSAYPDPNLRPSIRQVIQVLNFETTMPSLPDKMPVAVYHAPSTSMSSNEPPITSSLDMGR 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2333105 2335081 + CmaCh02G004500.1 Cma02g00450 288201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00450 658 Gene3D - 29 278 - -
Cma02g00450 658 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 15 658 - -
Cma02g00450 658 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Cma02g00450 658 CDD lectin_legume_LecRK_Arcelin_ConA 32 264 IPR001220 GO:0030246
Cma02g00450 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Cma02g00450 658 PANTHER - 15 658 - -
Cma02g00450 658 Pfam Legume lectin domain 32 270 IPR001220 GO:0030246
Cma02g00450 658 SUPERFAMILY Protein kinase-like (PK-like) 333 639 IPR011009 -
Cma02g00450 658 CDD STKc_IRAK 355 619 - -
Cma02g00450 658 Pfam Protein kinase domain 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00450 658 MobiDBLite consensus disorder prediction 638 658 - -
Cma02g00450 658 ProSitePatterns Protein kinases ATP-binding region signature. 355 379 IPR017441 GO:0005524
Cma02g00450 658 SMART serkin_6 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00450 658 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 264 IPR013320 -
Cma02g00450 658 ProSiteProfiles Protein kinase domain profile. 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00450 658 Gene3D Transferase(Phosphotransferase) domain 1 426 640 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00450 Cma-Chr2:2333105 Cma04g00857 Cma-Chr4:4387318 0 dispersed
Cma18g01203 Cma-Chr18:9533559 Cma02g00450 Cma-Chr2:2333105 1.87E-11 dispersed
Cma02g00450 Cma-Chr2:2333105 Cma02g00451 Cma-Chr2:2340668 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68325 PF00069 Pkinase 8.00E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00450 - - csv:101203101 1093.57