Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00472 ATGGACACTCTCTTTATCCCCATCACCTTCTCCAAACCTATTCATTCTTTACTCACCCGCACCACCAACGCCGGAGCTCGATCCAGGATCGGACCAGTTTCCTGCTTCTCCCTGCGTTCTTCTGCAATTCGGCTCAAGCGCTTCCGTTGCGCTGCCGATGCCTCCGATCACCGGCACGGCCACCACCACCACCACCACCACCATAGCTGTCAGCACCATTGCGGTGGTGACGGTGATGGAGTAGAGTTGACTGGAGCTCAGAAGGCGTTTGTTGGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTATTTGAGGGAGCATCTACACTTGTGTTGCGGTTCTGCTGCTTTGTTTATCACTGCGGCTGCATGTCCTTATTTGGTGCCTAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCTGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATAAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCCCTTGCCGCCTTTGCATCAATATTTATGGGGAACCCCTTGGAGGGAGGACTACTTCTTGTGATGTTTAATCTGGCTCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGACTGACGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCCCTTGTTCTGGATATGAATGATGATAACCTTCCTGATACTTCAGATCTGGAGCATCGAAAGGTGCCCGTGCGTGATATTGAAGTGGGCTCATATATCATGGTGGGAGCTGGTGAGTCTGTCCCCGTAGATTGTGAGGTTTATCATGGTTGTGCTACGATCACTGTTGAGCACTTAACAGGAGAAATCAAACCATTGCAAATAAAGGTCGGGCAAAGAGTACCAGGTGGAGCAAGAAATTTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACAAAATAAACCAAAGCTACAGAGGTGGCTTGATGAATTTGGTGAGAATTACAGCAAAGTGGTTGTAGTTTTATCTGTGGCTGTTGCCCTCATTGGACCATTATTGTTCAAGTGGCCCTTTATTTGCACACCAGTTTATAGAGCACTTGGGTTCATGGTAGCCGCATCACCATGTGCACTGGCTGCAGCTCCATTGGCATACGCTATTGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACATGTGCTTGATGCTATGGCTTCTTGTCACACCGTTGCATTTGATAAAACCGGGACATTGACTACAGGAGGACTTGTATTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGCGATAAATCACATTTGGCTTCCTGTTGCATACCCAGCTGTGAAAAAGAAGCCCTTGCCGTTGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTTGTAGATCATAGTGTGGGGAAAAACCTTCCTTCTATTTCTGTTGAAAGTTTCGAATATTTCCCTGGAAGAGGTCTCATCGCAACTTTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCCCTTGGTTCTGTGGATTTCATCACTTCCTTTTGCAAGTCCGAAAACGAATCAAGGAAGATCAAGGAAGCTGTTCGAGCATCATCATTTGGAAGCGAATTTGTTCATGCTGCTCTTTCAGTTGATCAGAAGGTAACACTGATTCACCTCGAGGATCAGCCTCGAGCTGGCGTCTTAGATGCAATAGCAGAACTACAAGATCAGGCAAAACTCCGTGTTATGATGTTAACTGGTGATCATGATTCAAGTGCATGGAAAATTGCAAATGCTGTGGGAATAAGTGAAGTTTACTACAGTCTTAAGCCTGAGGATAAACTTGCTCATGTGAAGGAAATTTCGAGGGAGAAGGGTGGTGGTCTGATCATGGTAGGCGAAGGTATAAACGATGCACCTGCACTTGCTGCAGCTACTGTAGGAATAGTTCTTGCCTGTCGTGCAAGCGCGACTGCTACAGCTGTCGCGGATGTCCTTCTTCTTCAAGATAGTATTTCCGGCGTTCCATTCTGTATTGCCAAATCTCGTCAGACGACTGCGCTGGTCAAGCAAAATGTTACCCTCGCCTTGTCGTCTATCCTTTTAGCCTCTCTCCCATCCATTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACACGAGGGTGGCACTCTCCTGGTCTGCCTGAACTCCATTCGTGCTCTAAATCATCCCTCATGGTCATGGAAGCAAGATTTTCAAAATCTGATCCACAATGCCAGATCTAGTCTGCACACGACACCCGAACCTAGCTCAGGTATGCTCTGA 2391 46.51 MDTLFIPITFSKPIHSLLTRTTNAGARSRIGPVSCFSLRSSAIRLKRFRCAADASDHRHGHHHHHHHHSCQHHCGGDGDGVELTGAQKAFVGFAEAIRWTDLANYLREHLHLCCGSAALFITAAACPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNLAHIAEEYFTKQSMTDVKELKESHPDFALVLDMNDDNLPDTSDLEHRKVPVRDIEVGSYIMVGAGESVPVDCEVYHGCATITVEHLTGEIKPLQIKVGQRVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQQNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPVYRALGFMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSHLASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKNLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKEAVRASSFGSEFVHAALSVDQKVTLIHLEDQPRAGVLDAIAELQDQAKLRVMMLTGDHDSSAWKIANAVGISEVYYSLKPEDKLAHVKEISREKGGGLIMVGEGINDAPALAAATVGIVLACRASATATAVADVLLLQDSISGVPFCIAKSRQTTALVKQNVTLALSSILLASLPSILGFLPLWLTVLLHEGGTLLVCLNSIRALNHPSWSWKQDFQNLIHNARSSLHTTPEPSSGML 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2473800 2483447 + CmaCh02G004720.1 Cma02g00472 288223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00472 796 PRINTS P-type cation-transporting ATPase superfamily signature 582 593 - -
Cma02g00472 796 PRINTS P-type cation-transporting ATPase superfamily signature 605 615 - -
Cma02g00472 796 PRINTS P-type cation-transporting ATPase superfamily signature 659 678 - -
Cma02g00472 796 PRINTS P-type cation-transporting ATPase superfamily signature 683 695 - -
Cma02g00472 796 PRINTS P-type cation-transporting ATPase superfamily signature 430 444 - -
Cma02g00472 796 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 243 451 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma02g00472 796 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 739 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma02g00472 796 Gene3D - 441 590 IPR023299 GO:0000166
Cma02g00472 796 Pfam haloacid dehalogenase-like hydrolase 428 672 - -
Cma02g00472 796 SUPERFAMILY HAD-like 428 759 IPR036412 -
Cma02g00472 796 ProSitePatterns E1-E2 ATPases phosphorylation site. 432 438 IPR018303 -
Cma02g00472 796 Pfam E1-E2 ATPase 242 410 - -
Cma02g00472 796 SFLD p-type atpase 412 712 IPR044492 -
Cma02g00472 796 Gene3D - 423 710 IPR023214 -
Cma02g00472 796 SFLD C1.7: P-type atpase like 412 712 - -
Cma02g00472 796 Gene3D - 207 333 - -
Cma02g00472 796 SUPERFAMILY Calcium ATPase, transmembrane domain M 171 743 IPR023298 -
Cma02g00472 796 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 33 786 - -
Cma02g00472 796 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 169 761 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma02g00472 796 SUPERFAMILY Calcium ATPase, transduction domain A 243 328 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00472 Cma-Chr2:2473800 Cma02g00493 Cma-Chr2:2627161 0 dispersed
Cma02g00472 Cma-Chr2:2473800 Cma10g00384 Cma-Chr10:1763343 1.66E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00472 K01534 - csv:101221102 1356.27