Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00489 ATGGCGATGGAGCTTCTCTCAGCCTACACCAACGCCCATCTCTCCGCCGCAATGGACCAAGACTCCGCCGTCCATGAAGCCGCCTCCGGTATCCACACTCTCAAAAAGCTCATCTCATTACTCTCCCACTCCCCCCCTTCTAACCTCGACTCCGATTGCCAAGCCGTTGCTAACGCCGCCGTCTCCCATTTCAAAAAGGCCATTTCTCTCCTCGGACACTCCCCTCGTACCGGCCACGCTCGATTCCGCCGCGCCCCTTTAGATTCCTCTCAAATTTACAACGCTACCCCCATTCAGCAAATCCCTCCGCCGCCCCTCGAATCTGCCACCACCATTAATTTCTCTCATTCCTCGTTTCCCGCCGCCGACTCTGAAATTAACCTTCGACACCAACCCTCTTCCTCTTCTTTCCAAATCACTGATCTCTCCAGGGTTTCCTCTGTTGTCTCTAAGCCCTCTTCTGGCTCCAAGAGAAAGTGCGGCTCTGAAAATTTGGGCTCTGGGAAGTGCGGCGAATCCTCCGGTGGTCGATGCCATTGCTCCAAGAAGAGAAAATTGAAGTTAAAAAGAGTGGTGAGAGTTCCAGCTATTAGCTCAAAGAACGCTGATATTCCTCCTGATGATTATTCATGGAGGAAATATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAATGCAGCAGTTTAAGAGGATGCCCTGCTAGAAAACATGTGGAGAGAGCTTCAGATGATCCATCTATGTTAATAGTGACATATGAAGGCGATCATAATCACTCTCAATCAGTGGCAGAGGCCTCAAGTCTCATCCTTGAATCATGGTGA 837 49.94 MAMELLSAYTNAHLSAAMDQDSAVHEAASGIHTLKKLISLLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGHSPRTGHARFRRAPLDSSQIYNATPIQQIPPPPLESATTINFSHSSFPAADSEINLRHQPSSSSFQITDLSRVSSVVSKPSSGSKRKCGSENLGSGKCGESSGGRCHCSKKRKLKLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2585531 2586851 - CmaCh02G004890.1 Cma02g00489 288240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00489 278 Pfam Plant zinc cluster domain 157 203 IPR018872 -
Cma02g00489 278 Pfam WRKY DNA -binding domain 207 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00489 278 Gene3D WRKY domain 190 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00489 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 107 277 IPR044810 GO:0003700
Cma02g00489 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 93 IPR044810 GO:0003700
Cma02g00489 278 ProSiteProfiles WRKY domain profile. 200 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00489 278 MobiDBLite consensus disorder prediction 148 168 - -
Cma02g00489 278 SUPERFAMILY WRKY DNA-binding domain 201 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00489 278 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 93 - -
Cma02g00489 278 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 107 277 - -
Cma02g00489 278 SMART WRKY_cls 205 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00489 Cma03g00963 CCT
Cma02g00489 Cma03g00963 ECH
Cma02g00489 Cma20g00968 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00489 Cma-Chr2:2585531 Cma03g00963 Cma-Chr3:6836165 1.71E-106 dispersed
Cma02g00489 Cma-Chr2:2585531 Cma20g00968 Cma-Chr20:4913335 2.58E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34442 PF03106 WRKY 2.30E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00489 - - bhj:120089490 470.314