Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00493 | ATGGGAACCCTCTCCTTCCCAATTGCGTCCTCCAAACCCCGCCTGTTACCGTCTCGGAGCCGAATTGCATTTTCAAACCCTTCTCTTCAACCATCTTTCCCTTCTTCTGCGTTTTCCGTTCCTAATTTTCCCTATCTCCACCTTCGGCGGCTTGTTCTCTGCGCCACAGCGGCAAATGATCATTCGAATCACGATGAACACCATCGTGTTCATTATCATCACCATGGTCACCACCATCACCATGGTCACCACCATTGCGATCATGATGCGGAGCTGACTGGGCCTCAGAGAGCGCTGATTGGATTCGCTAAAGCTATTAGATGGACGGACTTGGCGAATTATTTGAGGGAACATTTGCAATTATGTTGCTGCTCAATGGCTTTGTTTGTAGCTGCTGCTGTTTGCCCTTATTTGGTGCCGAAACCATTTGTGAAGCCTTGCCAAAATGCTCTCATTGCCATTGCTTTTCCTTTGGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGAGGAAAAGTAAACATCCATGTACTTATGGCTCTTGCAGCCTTTGCATCCATCTTTATGGGGAACGCCTTGGAAGGAGGGGTATTGCTAGGCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTATAAGTCGTGCAATGATTGATGTCAAAGAGTTGAAGGAAAGTTATCCAGATTCTGCCCTTGTTTTAGATACAAATGAGGGTAAACTTCCAAATATTGCAGATTTGTCCTACAAGAAGGTGCCTGTCCATGATGTACAAGTGGACTCCTATCTATTGGTTGGTGCTGGTGAGTCTGTTCCTGTAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACTATTGAGCACCTAACAGGTGAAATCAAACCTTTGGAGATTACGGTGGGAGACAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTTAAGGCCACAAAGACCTGGAAAGAGTCGACGTTGAGCCGGATAGTGAACTTGACTGAAGAGGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTGGATGAATTTGGCGAACATTATAGCAAAGCAGTTGTGGTTTTGTCCATTGCTGTTGCGCTTGTTGGTCCAATGTTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTAGCAGCATCACCTTGTGCTTTGGCCGTTGCACCATTGGCTTATACTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGCCATGTATTAGATGCTTTATCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGAAGCCTTATTTTCAAAGCAATTGAACCAATTTACGGACATCAGGTCAGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCACTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACCCACCCAATAGGAAGAGCTGTGGTTGACCATAGTTTGGGAAAAGACCTCCCTTCCTTTTCTGTCCAAAATTTGGAATATTTTCCGGGTAGAGGGCTCGTTGCAACGCTACAAGGTATTGAGTCAGGAACTGAAGGTGGGAAACTATTGAAAGCCTCTCTGGGTTCCTTGGATTTCATCACGTCACTCTACGAATCAGATACCAAATCAAAAAAGATCAAAGAAGCTGCGAGTACGTCTTCGTATGGAAGTGAATTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTATAATTGCAGAATTAACGGATATAGCGAAACTTCATGTTATGATGTTGACTGGAGATCATGAATCAAGTGCAAGGAGAGTGGCAAAAGCAGTGGGCATCAAGGAAGTCTACTTCAGTCTAAAACCTGAAGATAAGCTTAGTCACGTGAAAAGTATCTCTAGGGAGCATGGAGGAGGGCTAATCATGGTTGGTGAAGGCATTAATGATGCACCAGCTCTTGCTGCTGCCACCGTGGGAATAGTACTCGCTCAGCGTGCTAGTGCAACTGCTATAGCTGTGGCAGATGTTCTGTTGCTGCGGGATAACATTTCTGGTGTACCATTCTGCATCTCCAAGTCTCGTCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCCTTATTTTCAATATTTATCGCCTCCCTTCCCACAGTTTTAGGGTTTCTCCCTTTGTGGTTAACGGTACTTCTGCATGAAGGTGGTACTCTTCTCGTTTGCCTCAACTCCATACGCTCTCTGAATAATCCCAGTTGGTCCTGGAGGCAGGACTTTAGTCAATTGCTACTGAAGCTCAAATTTAGGGGCTCGCAGCCAAGCCTTAATACCATCTCTACCACTGTACACTCTTCCCCTGTATAG | 2454 | 44.95 | MGTLSFPIASSKPRLLPSRSRIAFSNPSLQPSFPSSAFSVPNFPYLHLRRLVLCATAANDHSNHDEHHRVHYHHHGHHHHHGHHHCDHDAELTGPQRALIGFAKAIRWTDLANYLREHLQLCCCSMALFVAAAVCPYLVPKPFVKPCQNALIAIAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNALEGGVLLGMFNLSHIAEEYFISRAMIDVKELKESYPDSALVLDTNEGKLPNIADLSYKKVPVHDVQVDSYLLVGAGESVPVDCEVFQGSATVTIEHLTGEIKPLEITVGDRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLSIAVALVGPMLFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYTIAISSCARKGILLKGGHVLDALSSCHTIAFDKTGTLTTGSLIFKAIEPIYGHQVRENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSLGKDLPSFSVQNLEYFPGRGLVATLQGIESGTEGGKLLKASLGSLDFITSLYESDTKSKKIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSIIAELTDIAKLHVMMLTGDHESSARRVAKAVGIKEVYFSLKPEDKLSHVKSISREHGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCISKSRQTTALVKQNASLALFSIFIASLPTVLGFLPLWLTVLLHEGGTLLVCLNSIRSLNNPSWSWRQDFSQLLLKLKFRGSQPSLNTISTTVHSSPV | 817 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2627161 | 2640512 | - | CmaCh02G004930.1 | Cma02g00493 | 288244 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00493 | 817 | Gene3D | - | 437 | 725 | IPR023214 | - | |
Cma02g00493 | 817 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 180 | 754 | IPR023298 | - | |
Cma02g00493 | 817 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 446 | 452 | IPR018303 | - | |
Cma02g00493 | 817 | Pfam | haloacid dehalogenase-like hydrolase | 442 | 687 | - | - | |
Cma02g00493 | 817 | SUPERFAMILY | Calcium ATPase, transduction domain A | 251 | 337 | IPR008250 | - | |
Cma02g00493 | 817 | SUPERFAMILY | HAD-like | 442 | 774 | IPR036412 | - | |
Cma02g00493 | 817 | PRINTS | P-type cation-transporting ATPase superfamily signature | 444 | 458 | - | - | |
Cma02g00493 | 817 | PRINTS | P-type cation-transporting ATPase superfamily signature | 620 | 630 | - | - | |
Cma02g00493 | 817 | PRINTS | P-type cation-transporting ATPase superfamily signature | 674 | 693 | - | - | |
Cma02g00493 | 817 | PRINTS | P-type cation-transporting ATPase superfamily signature | 698 | 710 | - | - | |
Cma02g00493 | 817 | Gene3D | - | 217 | 342 | - | - | |
Cma02g00493 | 817 | Pfam | E1-E2 ATPase | 248 | 424 | - | - | |
Cma02g00493 | 817 | SFLD | p-type atpase | 426 | 727 | IPR044492 | - | |
Cma02g00493 | 817 | CDD | P-type_ATPase_HM | 122 | 776 | - | - | |
Cma02g00493 | 817 | SFLD | C1.7: P-type atpase like | 426 | 727 | - | - | |
Cma02g00493 | 817 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 581 | 754 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma02g00493 | 817 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 252 | 469 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma02g00493 | 817 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 178 | 776 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Cma02g00493 | 817 | Gene3D | - | 455 | 605 | IPR023299 | GO:0000166 | |
Cma02g00493 | 817 | PANTHER | PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 | 49 | 805 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00472 | Cma-Chr2:2473800 | Cma02g00493 | Cma-Chr2:2627161 | 0 | dispersed | |
Cma02g00493 | Cma-Chr2:2627161 | Cma05g00708 | Cma-Chr5:3753976 | 1.82E-56 | dispersed | |
Cma02g00493 | Cma-Chr2:2627161 | Cma10g00384 | Cma-Chr10:1763343 | 1.76E-58 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00493 | K01534 | - | jre:109009121 | 1167.91 |