Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00493 ATGGGAACCCTCTCCTTCCCAATTGCGTCCTCCAAACCCCGCCTGTTACCGTCTCGGAGCCGAATTGCATTTTCAAACCCTTCTCTTCAACCATCTTTCCCTTCTTCTGCGTTTTCCGTTCCTAATTTTCCCTATCTCCACCTTCGGCGGCTTGTTCTCTGCGCCACAGCGGCAAATGATCATTCGAATCACGATGAACACCATCGTGTTCATTATCATCACCATGGTCACCACCATCACCATGGTCACCACCATTGCGATCATGATGCGGAGCTGACTGGGCCTCAGAGAGCGCTGATTGGATTCGCTAAAGCTATTAGATGGACGGACTTGGCGAATTATTTGAGGGAACATTTGCAATTATGTTGCTGCTCAATGGCTTTGTTTGTAGCTGCTGCTGTTTGCCCTTATTTGGTGCCGAAACCATTTGTGAAGCCTTGCCAAAATGCTCTCATTGCCATTGCTTTTCCTTTGGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGAGGAAAAGTAAACATCCATGTACTTATGGCTCTTGCAGCCTTTGCATCCATCTTTATGGGGAACGCCTTGGAAGGAGGGGTATTGCTAGGCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTATAAGTCGTGCAATGATTGATGTCAAAGAGTTGAAGGAAAGTTATCCAGATTCTGCCCTTGTTTTAGATACAAATGAGGGTAAACTTCCAAATATTGCAGATTTGTCCTACAAGAAGGTGCCTGTCCATGATGTACAAGTGGACTCCTATCTATTGGTTGGTGCTGGTGAGTCTGTTCCTGTAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACTATTGAGCACCTAACAGGTGAAATCAAACCTTTGGAGATTACGGTGGGAGACAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTTAAGGCCACAAAGACCTGGAAAGAGTCGACGTTGAGCCGGATAGTGAACTTGACTGAAGAGGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTGGATGAATTTGGCGAACATTATAGCAAAGCAGTTGTGGTTTTGTCCATTGCTGTTGCGCTTGTTGGTCCAATGTTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTAGCAGCATCACCTTGTGCTTTGGCCGTTGCACCATTGGCTTATACTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGCCATGTATTAGATGCTTTATCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGAAGCCTTATTTTCAAAGCAATTGAACCAATTTACGGACATCAGGTCAGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCACTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACCCACCCAATAGGAAGAGCTGTGGTTGACCATAGTTTGGGAAAAGACCTCCCTTCCTTTTCTGTCCAAAATTTGGAATATTTTCCGGGTAGAGGGCTCGTTGCAACGCTACAAGGTATTGAGTCAGGAACTGAAGGTGGGAAACTATTGAAAGCCTCTCTGGGTTCCTTGGATTTCATCACGTCACTCTACGAATCAGATACCAAATCAAAAAAGATCAAAGAAGCTGCGAGTACGTCTTCGTATGGAAGTGAATTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTATAATTGCAGAATTAACGGATATAGCGAAACTTCATGTTATGATGTTGACTGGAGATCATGAATCAAGTGCAAGGAGAGTGGCAAAAGCAGTGGGCATCAAGGAAGTCTACTTCAGTCTAAAACCTGAAGATAAGCTTAGTCACGTGAAAAGTATCTCTAGGGAGCATGGAGGAGGGCTAATCATGGTTGGTGAAGGCATTAATGATGCACCAGCTCTTGCTGCTGCCACCGTGGGAATAGTACTCGCTCAGCGTGCTAGTGCAACTGCTATAGCTGTGGCAGATGTTCTGTTGCTGCGGGATAACATTTCTGGTGTACCATTCTGCATCTCCAAGTCTCGTCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCCTTATTTTCAATATTTATCGCCTCCCTTCCCACAGTTTTAGGGTTTCTCCCTTTGTGGTTAACGGTACTTCTGCATGAAGGTGGTACTCTTCTCGTTTGCCTCAACTCCATACGCTCTCTGAATAATCCCAGTTGGTCCTGGAGGCAGGACTTTAGTCAATTGCTACTGAAGCTCAAATTTAGGGGCTCGCAGCCAAGCCTTAATACCATCTCTACCACTGTACACTCTTCCCCTGTATAG 2454 44.95 MGTLSFPIASSKPRLLPSRSRIAFSNPSLQPSFPSSAFSVPNFPYLHLRRLVLCATAANDHSNHDEHHRVHYHHHGHHHHHGHHHCDHDAELTGPQRALIGFAKAIRWTDLANYLREHLQLCCCSMALFVAAAVCPYLVPKPFVKPCQNALIAIAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNALEGGVLLGMFNLSHIAEEYFISRAMIDVKELKESYPDSALVLDTNEGKLPNIADLSYKKVPVHDVQVDSYLLVGAGESVPVDCEVFQGSATVTIEHLTGEIKPLEITVGDRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLSIAVALVGPMLFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYTIAISSCARKGILLKGGHVLDALSSCHTIAFDKTGTLTTGSLIFKAIEPIYGHQVRENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSLGKDLPSFSVQNLEYFPGRGLVATLQGIESGTEGGKLLKASLGSLDFITSLYESDTKSKKIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSIIAELTDIAKLHVMMLTGDHESSARRVAKAVGIKEVYFSLKPEDKLSHVKSISREHGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCISKSRQTTALVKQNASLALFSIFIASLPTVLGFLPLWLTVLLHEGGTLLVCLNSIRSLNNPSWSWRQDFSQLLLKLKFRGSQPSLNTISTTVHSSPV 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2627161 2640512 - CmaCh02G004930.1 Cma02g00493 288244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00493 817 Gene3D - 437 725 IPR023214 -
Cma02g00493 817 SUPERFAMILY Calcium ATPase, transmembrane domain M 180 754 IPR023298 -
Cma02g00493 817 ProSitePatterns E1-E2 ATPases phosphorylation site. 446 452 IPR018303 -
Cma02g00493 817 Pfam haloacid dehalogenase-like hydrolase 442 687 - -
Cma02g00493 817 SUPERFAMILY Calcium ATPase, transduction domain A 251 337 IPR008250 -
Cma02g00493 817 SUPERFAMILY HAD-like 442 774 IPR036412 -
Cma02g00493 817 PRINTS P-type cation-transporting ATPase superfamily signature 444 458 - -
Cma02g00493 817 PRINTS P-type cation-transporting ATPase superfamily signature 620 630 - -
Cma02g00493 817 PRINTS P-type cation-transporting ATPase superfamily signature 674 693 - -
Cma02g00493 817 PRINTS P-type cation-transporting ATPase superfamily signature 698 710 - -
Cma02g00493 817 Gene3D - 217 342 - -
Cma02g00493 817 Pfam E1-E2 ATPase 248 424 - -
Cma02g00493 817 SFLD p-type atpase 426 727 IPR044492 -
Cma02g00493 817 CDD P-type_ATPase_HM 122 776 - -
Cma02g00493 817 SFLD C1.7: P-type atpase like 426 727 - -
Cma02g00493 817 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 581 754 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma02g00493 817 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 252 469 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma02g00493 817 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 178 776 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma02g00493 817 Gene3D - 455 605 IPR023299 GO:0000166
Cma02g00493 817 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 49 805 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00472 Cma-Chr2:2473800 Cma02g00493 Cma-Chr2:2627161 0 dispersed
Cma02g00493 Cma-Chr2:2627161 Cma05g00708 Cma-Chr5:3753976 1.82E-56 dispersed
Cma02g00493 Cma-Chr2:2627161 Cma10g00384 Cma-Chr10:1763343 1.76E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00493 K01534 - jre:109009121 1167.91