Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00507 ATGGGGGTCTCATTACTTAAATTGCTTCTTAGACATATTTCATCATTTTTTCAACTTTCATCTTCTGACTACATACATTTACAACCGACTCTGAAGTACTACCATAAAATAGAAGGGGGTTTAAAACTTTTGAAGCCGATACTGGATGCAGTTGTTGATTCAGATATAGCTTCTGATGAAGAACTTATTAAGGCATTTGAAGAACTTGATCATTCAGTTGATGAACTAAGGGTGCTGTTTGAAAATTGGCAACCATTGTCGAGTAAAGTATACTTGGCACTGCGGAGTGAAGCATTAATAACAAAGATTGGGAAATCTAGCTTGGATATATTCCAGCTTCTTCGGTCTTCAAATGAAAATCTTCCGGAGGAATTAAGTTCATCATCTCTTGAGCACTCCGTCCAAAAGATTAAGCATATTGGAAGGGAAGAAATATCATCTGTTATTAAAGATGCCATAAGGAATCAAGCAGAGGGCATTGCACCCCCCAGCTCAGATGTTTTGGTGAAACTTGCAGATTCCCTGAGCTTGAGATCAAACCAGGAGATCTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCCGAACAAGCTGAACAAACCGGAGAAGCTGAGGACATCGATCAAATGGTTGCTCTTGTAACCTGTATGCATGAACGACTTATTACGATAAAGCAATCCCAAAGTTCGGGTCCTGTATCGATACCTACTGATTTCTGCTGCCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAACGGGTTTTTATAAAAAATTGGATCGATATGGGGCTCAATGTTTGTCCAAAGACTAGACAGACGTTGGTTCACACGAATCTTATACCTAACTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAGTTATCTGATCCCTCAAGGTCGGTGCTCGGTAGCTTCGAGTCTGATACCCATCGAGAACCCCTTTTTTCTCATTCCCCTCAGTCAGCCCGGTCTGTACTTGGTGGAACCCATCGAGATGGAAGTTCTTCCTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTGTCCAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGGCTATTGCTTACAAGTACGGAAGATCAATCGGCCAAATTGGAAGAAAATGGTGGTGATTTGATTGCTAAACCATCAATGTCACCATCTAGAACCAATGTTCCAAATTCCAGTGAGGATGAACAGTCACATATTCATAATAGGAAGGCTTCCACCTCGAGTGCAGTCTCAAATGCTAATCTCTCTCGAGGAACCTCAGGGGAAGCCAATGAATCTCCAAACGTGTCAACAAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCATTGGCTGCTGCTTCCTCAACTCCCAATCACATAGAACCAGAGCTTCCACCCAGATTAGCTGACTCAAGATCTCGAGGTAATATGATGTGGCTCCGACCATCAGAGAGGTTTTCCAGTAAAATAACTACACTGTCTGCTAACGAGACAAGGCCAGATATTTCAGCTATCGAAGCACAAGTTCGGAAGGTGGTCGAGGAATTGAAGAGCAGTTCACTTGAAACTTTAAGAGGTGCTACGGCTGAATTGCGGCTACTGGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGAGCCATTGAACATTTGGTAAATTTGCTTCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACTGCTCTTCTAAACTTATCCATCAATGATAATAACAAAAATGCCATTGCTCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGTCCGGAGGCAAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTGAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGCTGGGTATTGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAACTTATCAATATTCCATGAAAACAAGGCTAGAATTGTTCAAGCTGGAGCCGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTTGCTGTGTTGGCAAATCTCGCCACGATTCCCGAGGGAAGGTCTGCGATTGGTCAGGAAGGTGGAATTCCCGTTCTCGTTGAGGTCGTGGAGTTGGGTTCTGCTCGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACCAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCTGTGCCACCATTAGTGGCATTGTCCCAATCTGGTACTGCTAGAGCCAAAGAAAAGGCTCAAGCGCTTCTAAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGTAA 2445 43.84 MGVSLLKLLLRHISSFFQLSSSDYIHLQPTLKYYHKIEGGLKLLKPILDAVVDSDIASDEELIKAFEELDHSVDELRVLFENWQPLSSKVYLALRSEALITKIGKSSLDIFQLLRSSNENLPEELSSSSLEHSVQKIKHIGREEISSVIKDAIRNQAEGIAPPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAEQTGEAEDIDQMVALVTCMHERLITIKQSQSSGPVSIPTDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDMGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVLGSFESDTHREPLFSHSPQSARSVLGGTHRDGSSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSTEDQSAKLEENGGDLIAKPSMSPSRTNVPNSSEDEQSHIHNRKASTSSAVSNANLSRGTSGEANESPNVSTNLTGYGSDAAGESKSEPLAAASSTPNHIEPELPPRLADSRSRGNMMWLRPSERFSSKITTLSANETRPDISAIEAQVRKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEHLVNLLLSADSKIQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGIGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2723878 2730821 + CmaCh02G005070.1 Cma02g00507 288258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00507 814 Gene3D - 507 810 IPR011989 -
Cma02g00507 814 MobiDBLite consensus disorder prediction 403 417 - -
Cma02g00507 814 MobiDBLite consensus disorder prediction 331 363 - -
Cma02g00507 814 SUPERFAMILY ARM repeat 530 803 IPR016024 -
Cma02g00507 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 311 IPR013083 -
Cma02g00507 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 653 695 IPR000225 GO:0005515
Cma02g00507 814 PANTHER U BOX DOMAIN-CONTAINING 7 810 - -
Cma02g00507 814 SMART arm_5 723 763 IPR000225 GO:0005515
Cma02g00507 814 SMART arm_5 601 641 IPR000225 GO:0005515
Cma02g00507 814 SMART arm_5 683 722 IPR000225 GO:0005515
Cma02g00507 814 SMART arm_5 765 805 IPR000225 GO:0005515
Cma02g00507 814 SMART arm_5 642 682 IPR000225 GO:0005515
Cma02g00507 814 SMART arm_5 560 600 IPR000225 GO:0005515
Cma02g00507 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 694 735 IPR000225 GO:0005515
Cma02g00507 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 613 IPR000225 GO:0005515
Cma02g00507 814 MobiDBLite consensus disorder prediction 327 370 - -
Cma02g00507 814 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Cma02g00507 814 Pfam Armadillo/beta-catenin-like repeat 562 599 IPR000225 GO:0005515
Cma02g00507 814 Pfam Armadillo/beta-catenin-like repeat 644 681 IPR000225 GO:0005515
Cma02g00507 814 Pfam Armadillo/beta-catenin-like repeat 601 640 IPR000225 GO:0005515
Cma02g00507 814 Pfam U-box domain 237 307 IPR003613 GO:0004842|GO:0016567
Cma02g00507 814 Coils Coil 180 210 - -
Cma02g00507 814 MobiDBLite consensus disorder prediction 425 462 - -
Cma02g00507 814 MobiDBLite consensus disorder prediction 385 496 - -
Cma02g00507 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 810 - -
Cma02g00507 814 SUPERFAMILY RING/U-box 225 313 - -
Cma02g00507 814 CDD RING-Ubox_PUB 241 283 IPR045210 -
Cma02g00507 814 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00507 Cma07g00675 CCT
Cma02g00507 Cma20g00982 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00507 Cma-Chr2:2723878 Cma07g00675 Cma-Chr7:2951642 1.63E-142 dispersed
Cma06g00999 Cma-Chr6:6757644 Cma02g00507 Cma-Chr2:2723878 7.43E-08 dispersed
Cma14g02144 Cma-Chr14:14681077 Cma02g00507 Cma-Chr2:2723878 4.74E-13 dispersed
Cma02g00507 Cma-Chr2:2723878 Cma20g00982 Cma-Chr20:5237544 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00507 - - csv:101212423 1316.6