Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00514 ATGGCGGACGAGCAGCCTTCAGCCGCAAATCGCCGGAGGAGCCGAGGATCTGAGGCAACCGCCCGCCTTCAGGCTCTGGAACGTCTCAAAGCCATCCGCACTGGCGGCCGTCGATCAGAAGCCGGTGGTTTCCAAGTTAAGTTGGAGAACCCTATCTACGATACGATTCCCGAGGACGAGTATGATGCTCTTGTTGCAAAGCGTCGCGAAGAAGCCCGAGGGTTTATTGTTGACGACGACGGTCTTGGATATGGAGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGGATTTGTTCCTCCGACGAGTCTGATGGCGAGCCTGAGAAACCTAAGAAGAGGAAATCAGAGAAGAAAGAAGCACAACCGAAGAAGCCCTCTTCTACTTCTCTGTCGGCGGCGGCTGCGATGATGGGGAAACAGAAGCTTTCTTCGATGTTCACTTCATCGATCTTCAGGAAAACGGGTAAAGATGATAAGGCTAAAGGGTTGGCTTGTGACAGTATTGTCGATGATGTGATTGCCGAATTTGCGCCGGATGAGACTGATAGAGAGCGGCGTAGAAAGGGGCAAATCGGAGCTACACCGATATCGAAAACATTTGCGCCTGTTCCTGCTATGAAATGCGAGGGAGTAATTGCTCAGAGTCTTAATTTAACTGGTGGATCTGAATTGGTTAAGGGAACTGTAAACGGGAACTCTGGAATGACCAAGGATTTCACAAACAGTGATTTGGAGTCTGTGCGAGCTGATATAGAGATCCAGGGAAATGGTGAAACTAAGAAATTTGATTCAAAGGATGATTTAGATTCTGAAATGAATCTGGTTTCAGTTGGGCAATCTCATAATCCTTCGATCAAGGAAGATGTAATTGAAGATAATATGCCAATTGTGGTAGAAACGAAGTCAGAAGCTTTAGTGAAGAAGGAGCCGGTTTGTACTTTGAATGCTACGATTAGCGATGTAAAAGACCCAGCTTTGAGTGCCACTGCGGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAATGCTGATTCTGCTGCAGATACTTCTGAAGATAAATCCCATTTTGATATTGACGCTGATGGCTCTCTGCCTTTCTATATGGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACCGTATATCTGTTTGGCAAGGTCAAAGCTGGAGATACGTACCATAGTTGTTGTGTGGTGGTGAAAAACGTGCAGAGATGCGTATATGCCATTCCAAGTGCCTTTTTTCTTCATTCGGATGAGATGTTGAAGCTTCAGAACGATGCCGAACAATCCCAGCTTTCTCCTACAGATCTGCGCACCAAGTTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATAGCTCAGCAGTTGCTAGATCTCAATGTTCCAACATTTAGCATGACACCCGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTACGGGGGAAAATTATGTTCTTAAAATTAATTACCCATTCAAGCACCCCCCACTTCCTGCTGATCTAAAAGGAGAATCGTTCTGTGCACTCTTAGGAACGCATCGCAGTGCCTTGGAGCTTCTTCTCATTAAAAGGAAAATAAAGGGTCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAAGTGATAATTGACTCTCCAAAAGATGTTCAGATTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTCCTATGATTGCCACTGCAATAAACATAAAGACCATTATTAATGAAAAGCAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTAGCCACAGAATGGAAAAAGCCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACAGATAGAAATTCGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGCAATGAACGAGCCTTGTTGAATCGATTAATGATTGAATTGTTCAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCTGCATGTGGTCCAAAATAGGTCGTCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGGGCATTTTTGGGTCTGGAGCAAGTCCCGGAGTCATGTCTTGCATTGCTGGTCGGCTCTTATGTGATACGTACTTGTCTTCCCGTGACCTATTGAAAGAGATTAGTTATTCTTTGACAGAGCTAGCAAAGACTCAACTTAGCAAGGACCGCAAGGAAGTCACTCCTCACGATATTCCAAGAATGTACCATGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACACGTCAGTTGACTAATATTAGTGGTAACCTCTGGGGAAGAAGTCTGCAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAGTATATTGTCCCCGACAAGATTTCAACTTATGTGAAGGAAAAAAAGATGGTTAAAAAGAGAACGAATCATGGTTCTGAGGAAAAAAATCTTGATAATGTTGATTTAGATGATGCAAATTTAGAAGCTCCCAATACTGAAAGTGGAAAAGGAAAAAAGGGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATATTGCTCCTGGACTTCAACAGTCTGTATCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTCATTCCTCGTCTGCCGTCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTATTAAGCTCCAGCAACTTGACATTCAACAGCAGGCATTAAAGCTCACTGCAAACAGTATGTATGGATGCCTTGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTGGCAGAGCTTATTACTTCACAAGGAAGAGAAATATTGCAGAGCACTGTTGATCTTGTACAGAATAATCTGAACCTAGAGGTAATTTATGGTGATACCGATTCAATAATGATTCATAGTGGACTTGATGATATTGGTCAAGTGAAAGCAATTGCAGTAAAAGTTATACAAGAGGTCAACAAAAAGTATAAATGTTTAGAAATTGATCTTGATGGCTTGTATAAGAGAATGCTGCTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAGGATGGAATGCCATATGAGGTTATTGAGCGCAAGGGTCTTGATATGGTTCGTCGTGATTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGATCATGTGAGGATGTCACTGAATCGATACACGATTCTCTTGTGAAGATACAAGAGGATATGAGGAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACCAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACTAAGGTTAAAACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTGTAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTAAAAAAGGAAGATGGAAAATGGATGATCGACATCGTTTACTACCTGTCACAGCAGATTCACCCTGTGGTTTCCCGTCTATGTGCCTCAATCCAGGGCACTAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTTCAAAACAAATCAAGTGAAGTTTCCCGAAGTGATGTCTCCTCTTCCCTCTTGTGTTCCATAAACGATGAGGAAAGGTATCAGGGCTGTATACCACTGACATTAACTTGTCCCAGTTGTTCTGGTACTTTTGAGTGTCCTGCTATCTTCAGTTCTATATACAAATCAGCAGATGGAAAGCAAGAAAAGGCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGCGTTGTCCGAAATGTCCTGACGAAGCTAGTGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCGATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAATATGCCACACGTGCTGTCAATCTTCGAGTCATGGGCGACTCTGAGAAAGGAACCATCTGCCCAAACTATACCCACTGCAATGGGCGTCTAATAAGAAAGTACACAGAAGTGGATTTGTACAAGCAGCTTGCATATTTTAGTCACACTTTGGATACCATACGCTGTATGGAAAAGTTGGAGGTCCATGCAAGGGTAACTTTAGAGAAAGAAATGGCTAAAATTCGGCCAATAGTAGAGTTAGCTGCATCAACAATTCAAAGTCTTCGAGATCGCAGTGCATATGGTTGGGTGCAGTTGCAGGATTTTGTAGTTACAGTTTGA 4647 42.97 MADEQPSAANRRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGICSSDESDGEPEKPKKRKSEKKEAQPKKPSSTSLSAAAAMMGKQKLSSMFTSSIFRKTGKDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGQIGATPISKTFAPVPAMKCEGVIAQSLNLTGGSELVKGTVNGNSGMTKDFTNSDLESVRADIEIQGNGETKKFDSKDDLDSEMNLVSVGQSHNPSIKEDVIEDNMPIVVETKSEALVKKEPVCTLNATISDVKDPALSATAGWQAVRSEGSGNADSAADTSEDKSHFDIDADGSLPFYMVDAHEELFGANMGTVYLFGKVKAGDTYHSCCVVVKNVQRCVYAIPSAFFLHSDEMLKLQNDAEQSQLSPTDLRTKLQEVTAGLKNEIAQQLLDLNVPTFSMTPVKRKYAFERQDIPTGENYVLKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPGSQRVSWCKFEVIIDSPKDVQISTSSSKTLEIPPMIATAINIKTIINEKQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESTDRNSKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSCMWSKIGRLKRSVMPKLGKGGGIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLSKDRKEVTPHDIPRMYHASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISTYVKEKKMVKKRTNHGSEEKNLDNVDLDDANLEAPNTESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGVIPRLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGIKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDIGQVKAIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVTESIHDSLVKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVALRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSVGIAQRARHPDELKKEDGKWMIDIVYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVSRSDVSSSLLCSINDEERYQGCIPLTLTCPSCSGTFECPAIFSSIYKSADGKQEKAVDEPTSKFWNNLRCPKCPDEASAGRMTPGMIANQVKRQAERFISMYYNGLLMCEDETCKYATRAVNLRVMGDSEKGTICPNYTHCNGRLIRKYTEVDLYKQLAYFSHTLDTIRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSLRDRSAYGWVQLQDFVVTV 1548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2783121 2795311 - CmaCh02G005140.1 Cma02g00514 288265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00514 1548 Gene3D - 1144 1330 IPR042087 -
Cma02g00514 1548 MobiDBLite consensus disorder prediction 76 136 - -
Cma02g00514 1548 PANTHER DNA POLYMERASE 348 1545 - -
Cma02g00514 1548 TIGRFAM pol2: DNA polymerase (pol2) 51 1298 - -
Cma02g00514 1548 Gene3D Palm domain of DNA polymerase 919 1124 IPR023211 -
Cma02g00514 1548 Coils Coil 1094 1114 - -
Cma02g00514 1548 MobiDBLite consensus disorder prediction 1 18 - -
Cma02g00514 1548 ProSitePatterns DNA polymerase family B signature. 1068 1076 IPR017964 GO:0000166|GO:0003676
Cma02g00514 1548 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 348 1545 - -
Cma02g00514 1548 PRINTS DNA-directed DNA-polymerase family B signature 937 950 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cma02g00514 1548 PRINTS DNA-directed DNA-polymerase family B signature 1013 1025 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cma02g00514 1548 PRINTS DNA-directed DNA-polymerase family B signature 1066 1074 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cma02g00514 1548 Gene3D DNA Polymerase alpha, zinc finger 1339 1532 IPR038256 -
Cma02g00514 1548 MobiDBLite consensus disorder prediction 881 899 - -
Cma02g00514 1548 Gene3D - 580 896 IPR036397 GO:0003676
Cma02g00514 1548 MobiDBLite consensus disorder prediction 1 22 - -
Cma02g00514 1548 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Cma02g00514 1548 MobiDBLite consensus disorder prediction 881 919 - -
Cma02g00514 1548 Gene3D - 367 566 - -
Cma02g00514 1548 Gene3D - 407 533 - -
Cma02g00514 1548 Gene3D Helix hairpin bin 978 1029 - -
Cma02g00514 1548 Pfam DNA Polymerase alpha zinc finger 1339 1544 IPR015088 GO:0003887|GO:0006260
Cma02g00514 1548 MobiDBLite consensus disorder prediction 88 124 - -
Cma02g00514 1548 CDD DNA_polB_alpha_exo 580 831 - -
Cma02g00514 1548 SMART polmehr3 580 1080 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cma02g00514 1548 Pfam DNA polymerase family B, exonuclease domain 395 774 IPR006133 -
Cma02g00514 1548 CDD POLBc_alpha 913 1316 IPR045846 GO:0003887|GO:1902975
Cma02g00514 1548 SUPERFAMILY Ribonuclease H-like 362 868 IPR012337 -
Cma02g00514 1548 Pfam DNA polymerase family B 840 1300 IPR006134 GO:0000166|GO:0003677
Cma02g00514 1548 SUPERFAMILY DNA/RNA polymerases 864 1316 IPR043502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00514 Cma-Chr2:2783121 Cma07g00817 Cma-Chr7:3771937 2.65E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00514 K02320 - csv:101211201 2645.92