Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00515 ATGGAGTGGGTTCGAGGAGATGAACTGGGTCGTGGAAATTTTGGGACCATCAGTTTAGCAAGACTCACAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCTGTTTCGGTGTCCTCTGCTTCGCTGAAGAACGAGAAGAAAGTTTTGGATCGAATTGGGAATTGCCCACAAATCGTTACTTGTTATGGCGATGGATTTAGTGTTGAAAGAGATGGGGAGAAGTATTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGCCTTGCGGATACTGTGAAACTCCACGGCGGTGGGTTGCTGGAATTTGATGTTCGACGGTATACGAGGGCGATTCTTTGTGGGCTTCGGCATGTTCATGGTAATGGGTTTGTTCATTGTGATTTGAAGCTTTCCAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTTGGGCTTGCGAAAGAGGCCGCGGCGGCGGAAACAGAGGAAACAGAGGAGAATTTTGAGTGGAGAGGGACGCCGATGTATATGTCGCCAGAGACGGTAAACGGCGGCAAGTATGCGCCGCCGTGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGAGAGGAAAGCCGGCGTGGAGGGTTAAGCCAGAAACGGATATATTTGGGCTGATGATGATGATCGGAATCGGAGACGAAGTGCCGGAGCTGCCAGAGAATTTATCGGAGGAGGGGAAAAATTTTCTCCGTCGGTGTTTCGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTCTGAATCACCCATTTGTCGCCGGTGCCGGAGAGACTGTTACATTAAAAGAATCGAACCTGTCAACCGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCTTCAAATCAACGTTGTGACGAGATGAATTTGTGTTGTTCTAGTTCCTCGGCGGAGATGATGAATAGACTCCGACGGCTAGTGACGGAGAAGCCATTGGATTGGTCTGTTACAGAAAGTTGGGTCACAGTGAGGTGA 1041 49.57 MEWVRGDELGRGNFGTISLARLTKGFDQFPPLMAVKSSVSVSVSSASLKNEKKVLDRIGNCPQIVTCYGDGFSVERDGEKYYNLFLEYANGGSLADTVKLHGGGLLEFDVRRYTRAILCGLRHVHGNGFVHCDLKLSNVLVFGNGEVKIADFGLAKEAAAAETEETEENFEWRGTPMYMSPETVNGGKYAPPCDVWALGCAVVEMVRGKPAWRVKPETDIFGLMMMIGIGDEVPELPENLSEEGKNFLRRCFVKDPRKRWTAEMLLNHPFVAGAGETVTLKESNLSTESPTGPFDFPEFVCSSNQRCDEMNLCCSSSSAEMMNRLRRLVTEKPLDWSVTESWVTVR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2796306 2797346 - CmaCh02G005150.1 Cma02g00515 288266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00515 346 SUPERFAMILY Protein kinase-like (PK-like) 3 307 IPR011009 -
Cma02g00515 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Cma02g00515 346 CDD STKc_MAPKKK 2 271 - -
Cma02g00515 346 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 323 - -
Cma02g00515 346 ProSiteProfiles Protein kinase domain profile. 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00515 346 SMART serkin_6 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00515 346 Gene3D Transferase(Phosphotransferase) domain 1 2 336 - -
Cma02g00515 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cma02g00515 346 Pfam Protein kinase domain 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00515 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00515 Cma-Chr2:2796306 Cma20g00987 Cma-Chr20:5356228 0 dispersed
Cma02g00515 Cma-Chr2:2796306 Cma17g00914 Cma-Chr17:6881049 9.06E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68329 PF00069 Pkinase 2.50E-52 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00515 - - csv:101214756 567.0