Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00520 ATGGATGGCAGTATTAATGATCTTAAGGTGCCTCTAAATCCACGGGACCTCGATAATTATGTCGTCGGAATATCACAGGAAGACAGAGTGGCAGAATTTCTAGAAGCCGGAGGTTTCGCCGCCGAGGAGTTCTCAGAACAAGGCATTGCAATATGTCGTCTAAGAATCAGAAGAATGGTCTGCACGGCCAAAGCCCGATCACTTCAACATGCCGTACGCATGGTCAACGGCGTCAAACGAGTACTCATCGGTCCCGGAATAGATGAAGCCAAAATCTTCTTCGATCCAAATTTGACCACCGAAGCCGAAATCCTCGCTGCCACCGATGATTCCGGCTTCGAATCCGAGCTCATCTCCGCCGCAGACGAGGCCTACAAAGTTCATATAAAACTCGATCAAGTTGGCCCTGCGGACATGACCGCCATAAGAACCTCTCTCGAGCAAGCTTCTGGAGTGAACTCTGTTGAAATGGATGGGCCAGGGCAGATGGTTTCCATCCACTATGACCCTGACCGGACTGGTCCGAGGTCCCTTTTGCAGTGCCTCAAGAGCTACGGAGCGAGTTTGTATGTGCCACCGAAGAGAAGAGATGTGGAGCAGCTTCAAGAAGCTTGTACTTATAGGAACTTGTTCTTGTTCAGCTGCTTGTTTTCTGTTCCTGTGGTGGCTTTTGCAATGGTGCTTCCTATGCTTCCTCCTTATGGGGAGTGGTTGAATTTTAGGGTTTACAATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACACCAGTCCAGTTCTTTGCTGGCCGGAGATTTTATGTAGGATCATACCGTGCATTACAACAGAAATCAGCAAATATGGATGTTTTGGTTGCTGTAGGCACCAATGCAGCATACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAGAGGGAAAGATTTCTTTGAGTTTAGCTCCATGTTGATCTCCTTCATTCAACTTGGAAAGTATTTGGAGGTCATGGCCAAAGGGAAATCATCAGATACTTTAGCAAAGCTTGCTCATCTTGCTCCTCATACCGCTTGTTTGATGACCTTTGATGATCATGGAAATTTGCTATCAGAGATGGAGATTGATACCCAGTTGATACAGAGGAATGATATCATTAAGGTTGTTGCTGGGGCAAAAGTTCCTGTTGATGGAATTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACTGGAGAAGCAAGATCCATTGCGAAAACACCTGGTGATAAGGTTATTGGCGGGACTGTCAATGAAAATGGATGCTTATTTATTAAGACCACACATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTTGTGGAATCAGCTCAGCTATCACGAGCACCGGCTCAAAAATTAGCAGACCGGATATCAAAGTTTTTTGTTCCTGTTGTTGTTGTGGCAGCATTTGTGACATGGCTTGGTTGGTTAATTTGTGGGGAAGCTGGTTTGTACCCTAAACATTTTATTCCAAAGGGCATGGATGAGTTTGAACTTGCACTGCAATTTGGCATTTCAGTGCTGGTGATCGCGTGCCCATGTGCCCTTGGTTTAGCAACACCAACTGCTATCATGGTTGCATCAGGGAAGGGTGCTTCTCTTGGTGTCCTCATTAAGGGAGCAAGTGCACTTCAAAATGCGTACAAGGTGAAAATGGTAGTTTTCGACAAGACTGGAACTCTAACGGTTGGCAGGCCAGAGGTTGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGCGATGTAGCAATAGCAATTGAGTCAAACAGCAAACACCCTTTAGCAAAATGTGTAGTGGATCATGCAATGAAAATGAGAAAAAAGTTTGGGGCCCGAACCGAATGTCGCAAACGCATACAGAACTTTGAGGTGTTCCCGGGAGGAGGGGTTGGAGGAAAAATTGATAGAAAACCAGTTTTAGTAGGAAACCGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTCGATCGTTATGTTATAGAAAATGAGCGGCTGGCTCAAACATGTATATTAGTGGCTATAAATGGCAGGGTAGCTGGAGGTTTTGGTGTTATAGATGCGCCAAAGTCTGGGACTAAAGCTGTTATATCGTATCTTCGCTCAATCGGCATCTCAAGCATAATGGTCACTGGCGATAACTGGGCCACAGCATTTGCCGTTGCAAGAGGGGTTGGGATCAATGAGGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATCAAATCCTTAAAGACAACAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAACGACTCGCATGCCTTAGCTGCAGCTGATGTTGGCATTGCCATTGGTGCTGGAACAAATATTGCTATAGAAGCAGCTGATATAGTTCTCATGCGAAGCAATTTAGAAGATGTAGTTACAGCCATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATCTGGGCACTTGGCTATAATATTATAGGTATGCCTATTGCTGCCGGAATCTTATATCCATTTACTGGAATCCGATTGCCGCCGTGGCTCGCGGGTGCCTGCATGGCTGCTTCTTCCCTTAGCGTCGTATGTTCTTCTCTCTTATTGAAATGCTATAGGAGACCCTTGAATTTTCAATCCACTTGA 2697 44.57 MDGSINDLKVPLNPRDLDNYVVGISQEDRVAEFLEAGGFAAEEFSEQGIAICRLRIRRMVCTAKARSLQHAVRMVNGVKRVLIGPGIDEAKIFFDPNLTTEAEILAATDDSGFESELISAADEAYKVHIKLDQVGPADMTAIRTSLEQASGVNSVEMDGPGQMVSIHYDPDRTGPRSLLQCLKSYGASLYVPPKRRDVEQLQEACTYRNLFLFSCLFSVPVVAFAMVLPMLPPYGEWLNFRVYNMLTVGMVLKWIFCTPVQFFAGRRFYVGSYRALQQKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFRGKDFFEFSSMLISFIQLGKYLEVMAKGKSSDTLAKLAHLAPHTACLMTFDDHGNLLSEMEIDTQLIQRNDIIKVVAGAKVPVDGIVISGESNVNESTITGEARSIAKTPGDKVIGGTVNENGCLFIKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADRISKFFVPVVVVAAFVTWLGWLICGEAGLYPKHFIPKGMDEFELALQFGISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKMVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSKHPLAKCVVDHAMKMRKKFGARTECRKRIQNFEVFPGGGVGGKIDRKPVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCILVAINGRVAGGFGVIDAPKSGTKAVISYLRSIGISSIMVTGDNWATAFAVARGVGINEVFAEMDPIGKANKIKSLKTTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLNFQST 898
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 2852337 2859551 - CmaCh02G005200.1 Cma02g00520 288271
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00520 898 PRINTS Copper-transporting ATPase 1 signature 246 266 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase 1 signature 211 232 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase 1 signature 266 291 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase 1 signature 51 76 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase 1 signature 77 100 - -
Cma02g00520 898 PRINTS P-type cation-transporting ATPase superfamily signature 724 734 - -
Cma02g00520 898 PRINTS P-type cation-transporting ATPase superfamily signature 406 420 - -
Cma02g00520 898 PRINTS P-type cation-transporting ATPase superfamily signature 702 713 - -
Cma02g00520 898 PRINTS P-type cation-transporting ATPase superfamily signature 570 584 - -
Cma02g00520 898 PRINTS P-type cation-transporting ATPase superfamily signature 777 796 - -
Cma02g00520 898 PRINTS P-type cation-transporting ATPase superfamily signature 800 812 - -
Cma02g00520 898 SUPERFAMILY HAD-like 568 883 IPR036412 -
Cma02g00520 898 SFLD p-type atpase 552 829 IPR044492 -
Cma02g00520 898 SUPERFAMILY Calcium ATPase, transduction domain A 370 456 IPR008250 -
Cma02g00520 898 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 283 886 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma02g00520 898 CDD P-type_ATPase_Cu-like 211 873 - -
Cma02g00520 898 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 323 607 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma02g00520 898 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 685 854 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma02g00520 898 SUPERFAMILY HMA, heavy metal-associated domain 47 120 IPR036163 GO:0046872
Cma02g00520 898 SUPERFAMILY HMA, heavy metal-associated domain 137 191 IPR036163 GO:0046872
Cma02g00520 898 Gene3D - 577 656 IPR023299 GO:0000166
Cma02g00520 898 Gene3D - 657 708 IPR023299 GO:0000166
Cma02g00520 898 Gene3D - 52 113 - -
Cma02g00520 898 Pfam E1-E2 ATPase 369 548 - -
Cma02g00520 898 SFLD Haloacid Dehalogenase 552 829 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase signature 850 864 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase signature 479 493 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase signature 268 287 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase signature 320 339 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase signature 340 358 - -
Cma02g00520 898 PRINTS Copper-transporting ATPase signature 754 771 - -
Cma02g00520 898 CDD HMA 54 116 IPR006121 GO:0046872
Cma02g00520 898 Pfam haloacid dehalogenase-like hydrolase 566 791 - -
Cma02g00520 898 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 12 897 - -
Cma02g00520 898 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872
Cma02g00520 898 SUPERFAMILY Calcium ATPase, transmembrane domain M 328 564 IPR023298 -
Cma02g00520 898 Gene3D - 537 833 IPR023214 -
Cma02g00520 898 Gene3D - 338 460 - -
Cma02g00520 898 ProSitePatterns E1-E2 ATPases phosphorylation site. 572 578 IPR018303 -
Cma02g00520 898 PANTHER COPPER-TRANSPORTING ATPASE HMA4 12 897 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00520 Cma-Chr2:2852337 Cma02g01462 Cma-Chr2:8390166 0 dispersed
Cma02g00520 Cma-Chr2:2852337 Cma03g00222 Cma-Chr3:3337382 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00520 K17686 - csv:101214276 1406.73