Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00520 | ATGGATGGCAGTATTAATGATCTTAAGGTGCCTCTAAATCCACGGGACCTCGATAATTATGTCGTCGGAATATCACAGGAAGACAGAGTGGCAGAATTTCTAGAAGCCGGAGGTTTCGCCGCCGAGGAGTTCTCAGAACAAGGCATTGCAATATGTCGTCTAAGAATCAGAAGAATGGTCTGCACGGCCAAAGCCCGATCACTTCAACATGCCGTACGCATGGTCAACGGCGTCAAACGAGTACTCATCGGTCCCGGAATAGATGAAGCCAAAATCTTCTTCGATCCAAATTTGACCACCGAAGCCGAAATCCTCGCTGCCACCGATGATTCCGGCTTCGAATCCGAGCTCATCTCCGCCGCAGACGAGGCCTACAAAGTTCATATAAAACTCGATCAAGTTGGCCCTGCGGACATGACCGCCATAAGAACCTCTCTCGAGCAAGCTTCTGGAGTGAACTCTGTTGAAATGGATGGGCCAGGGCAGATGGTTTCCATCCACTATGACCCTGACCGGACTGGTCCGAGGTCCCTTTTGCAGTGCCTCAAGAGCTACGGAGCGAGTTTGTATGTGCCACCGAAGAGAAGAGATGTGGAGCAGCTTCAAGAAGCTTGTACTTATAGGAACTTGTTCTTGTTCAGCTGCTTGTTTTCTGTTCCTGTGGTGGCTTTTGCAATGGTGCTTCCTATGCTTCCTCCTTATGGGGAGTGGTTGAATTTTAGGGTTTACAATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACACCAGTCCAGTTCTTTGCTGGCCGGAGATTTTATGTAGGATCATACCGTGCATTACAACAGAAATCAGCAAATATGGATGTTTTGGTTGCTGTAGGCACCAATGCAGCATACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAGAGGGAAAGATTTCTTTGAGTTTAGCTCCATGTTGATCTCCTTCATTCAACTTGGAAAGTATTTGGAGGTCATGGCCAAAGGGAAATCATCAGATACTTTAGCAAAGCTTGCTCATCTTGCTCCTCATACCGCTTGTTTGATGACCTTTGATGATCATGGAAATTTGCTATCAGAGATGGAGATTGATACCCAGTTGATACAGAGGAATGATATCATTAAGGTTGTTGCTGGGGCAAAAGTTCCTGTTGATGGAATTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACTGGAGAAGCAAGATCCATTGCGAAAACACCTGGTGATAAGGTTATTGGCGGGACTGTCAATGAAAATGGATGCTTATTTATTAAGACCACACATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTTGTGGAATCAGCTCAGCTATCACGAGCACCGGCTCAAAAATTAGCAGACCGGATATCAAAGTTTTTTGTTCCTGTTGTTGTTGTGGCAGCATTTGTGACATGGCTTGGTTGGTTAATTTGTGGGGAAGCTGGTTTGTACCCTAAACATTTTATTCCAAAGGGCATGGATGAGTTTGAACTTGCACTGCAATTTGGCATTTCAGTGCTGGTGATCGCGTGCCCATGTGCCCTTGGTTTAGCAACACCAACTGCTATCATGGTTGCATCAGGGAAGGGTGCTTCTCTTGGTGTCCTCATTAAGGGAGCAAGTGCACTTCAAAATGCGTACAAGGTGAAAATGGTAGTTTTCGACAAGACTGGAACTCTAACGGTTGGCAGGCCAGAGGTTGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGCGATGTAGCAATAGCAATTGAGTCAAACAGCAAACACCCTTTAGCAAAATGTGTAGTGGATCATGCAATGAAAATGAGAAAAAAGTTTGGGGCCCGAACCGAATGTCGCAAACGCATACAGAACTTTGAGGTGTTCCCGGGAGGAGGGGTTGGAGGAAAAATTGATAGAAAACCAGTTTTAGTAGGAAACCGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTCGATCGTTATGTTATAGAAAATGAGCGGCTGGCTCAAACATGTATATTAGTGGCTATAAATGGCAGGGTAGCTGGAGGTTTTGGTGTTATAGATGCGCCAAAGTCTGGGACTAAAGCTGTTATATCGTATCTTCGCTCAATCGGCATCTCAAGCATAATGGTCACTGGCGATAACTGGGCCACAGCATTTGCCGTTGCAAGAGGGGTTGGGATCAATGAGGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATCAAATCCTTAAAGACAACAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAACGACTCGCATGCCTTAGCTGCAGCTGATGTTGGCATTGCCATTGGTGCTGGAACAAATATTGCTATAGAAGCAGCTGATATAGTTCTCATGCGAAGCAATTTAGAAGATGTAGTTACAGCCATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATCTGGGCACTTGGCTATAATATTATAGGTATGCCTATTGCTGCCGGAATCTTATATCCATTTACTGGAATCCGATTGCCGCCGTGGCTCGCGGGTGCCTGCATGGCTGCTTCTTCCCTTAGCGTCGTATGTTCTTCTCTCTTATTGAAATGCTATAGGAGACCCTTGAATTTTCAATCCACTTGA | 2697 | 44.57 | MDGSINDLKVPLNPRDLDNYVVGISQEDRVAEFLEAGGFAAEEFSEQGIAICRLRIRRMVCTAKARSLQHAVRMVNGVKRVLIGPGIDEAKIFFDPNLTTEAEILAATDDSGFESELISAADEAYKVHIKLDQVGPADMTAIRTSLEQASGVNSVEMDGPGQMVSIHYDPDRTGPRSLLQCLKSYGASLYVPPKRRDVEQLQEACTYRNLFLFSCLFSVPVVAFAMVLPMLPPYGEWLNFRVYNMLTVGMVLKWIFCTPVQFFAGRRFYVGSYRALQQKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFRGKDFFEFSSMLISFIQLGKYLEVMAKGKSSDTLAKLAHLAPHTACLMTFDDHGNLLSEMEIDTQLIQRNDIIKVVAGAKVPVDGIVISGESNVNESTITGEARSIAKTPGDKVIGGTVNENGCLFIKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADRISKFFVPVVVVAAFVTWLGWLICGEAGLYPKHFIPKGMDEFELALQFGISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKMVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSKHPLAKCVVDHAMKMRKKFGARTECRKRIQNFEVFPGGGVGGKIDRKPVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCILVAINGRVAGGFGVIDAPKSGTKAVISYLRSIGISSIMVTGDNWATAFAVARGVGINEVFAEMDPIGKANKIKSLKTTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLNFQST | 898 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2852337 | 2859551 | - | CmaCh02G005200.1 | Cma02g00520 | 288271 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase 1 signature | 246 | 266 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase 1 signature | 211 | 232 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase 1 signature | 266 | 291 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase 1 signature | 51 | 76 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase 1 signature | 77 | 100 | - | - | |
Cma02g00520 | 898 | PRINTS | P-type cation-transporting ATPase superfamily signature | 724 | 734 | - | - | |
Cma02g00520 | 898 | PRINTS | P-type cation-transporting ATPase superfamily signature | 406 | 420 | - | - | |
Cma02g00520 | 898 | PRINTS | P-type cation-transporting ATPase superfamily signature | 702 | 713 | - | - | |
Cma02g00520 | 898 | PRINTS | P-type cation-transporting ATPase superfamily signature | 570 | 584 | - | - | |
Cma02g00520 | 898 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 796 | - | - | |
Cma02g00520 | 898 | PRINTS | P-type cation-transporting ATPase superfamily signature | 800 | 812 | - | - | |
Cma02g00520 | 898 | SUPERFAMILY | HAD-like | 568 | 883 | IPR036412 | - | |
Cma02g00520 | 898 | SFLD | p-type atpase | 552 | 829 | IPR044492 | - | |
Cma02g00520 | 898 | SUPERFAMILY | Calcium ATPase, transduction domain A | 370 | 456 | IPR008250 | - | |
Cma02g00520 | 898 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 283 | 886 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Cma02g00520 | 898 | CDD | P-type_ATPase_Cu-like | 211 | 873 | - | - | |
Cma02g00520 | 898 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 323 | 607 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma02g00520 | 898 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 685 | 854 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma02g00520 | 898 | SUPERFAMILY | HMA, heavy metal-associated domain | 47 | 120 | IPR036163 | GO:0046872 | |
Cma02g00520 | 898 | SUPERFAMILY | HMA, heavy metal-associated domain | 137 | 191 | IPR036163 | GO:0046872 | |
Cma02g00520 | 898 | Gene3D | - | 577 | 656 | IPR023299 | GO:0000166 | |
Cma02g00520 | 898 | Gene3D | - | 657 | 708 | IPR023299 | GO:0000166 | |
Cma02g00520 | 898 | Gene3D | - | 52 | 113 | - | - | |
Cma02g00520 | 898 | Pfam | E1-E2 ATPase | 369 | 548 | - | - | |
Cma02g00520 | 898 | SFLD | Haloacid Dehalogenase | 552 | 829 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase signature | 850 | 864 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase signature | 479 | 493 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase signature | 268 | 287 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase signature | 320 | 339 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase signature | 340 | 358 | - | - | |
Cma02g00520 | 898 | PRINTS | Copper-transporting ATPase signature | 754 | 771 | - | - | |
Cma02g00520 | 898 | CDD | HMA | 54 | 116 | IPR006121 | GO:0046872 | |
Cma02g00520 | 898 | Pfam | haloacid dehalogenase-like hydrolase | 566 | 791 | - | - | |
Cma02g00520 | 898 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 12 | 897 | - | - | |
Cma02g00520 | 898 | ProSiteProfiles | Heavy-metal-associated domain profile. | 51 | 117 | IPR006121 | GO:0046872 | |
Cma02g00520 | 898 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 328 | 564 | IPR023298 | - | |
Cma02g00520 | 898 | Gene3D | - | 537 | 833 | IPR023214 | - | |
Cma02g00520 | 898 | Gene3D | - | 338 | 460 | - | - | |
Cma02g00520 | 898 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 572 | 578 | IPR018303 | - | |
Cma02g00520 | 898 | PANTHER | COPPER-TRANSPORTING ATPASE HMA4 | 12 | 897 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00520 | Cma-Chr2:2852337 | Cma02g01462 | Cma-Chr2:8390166 | 0 | dispersed | |
Cma02g00520 | Cma-Chr2:2852337 | Cma03g00222 | Cma-Chr3:3337382 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00520 | K17686 | - | csv:101214276 | 1406.73 |