Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00523 | ATGTGGGATCTCAATGATTCGCCCGATCATGGCGGAACTGATGAATTTGAGGGCCTTTCGTCGATTGACGGCGATGATGAAAGAGCGAAATGGGTTGGATCAATTAATTCCAACTCGAGCTCTTCAGCAGTGATTTTGGAGGATGGATCCGACGCTGATGAAGCCAGCGTCGGCGAGCGCGAACACCCAATCTCCCGGGAAAGCTTCTCGGCGACCCACCCGCCGGAAACTCGTCAGTTCTTCCCCCTGGAGAATTCCAACGTGGATGCTTCATCAACCGGCGGTGGTTCTACTGCGTTTCCACGAGCTCGGTGGTTCGGCGTGAAGTTCTGCCAGACAGAGCCTGTCTCCGCCGTGAGACCAATGGTGGTTCTGCAACCAATAAAGAAAAGCCGACGAGGGCCAAGGTCTCGAAGCTCTCAATATCGCGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCTCATATATGGGACTGTGGCAAACAAGTTTATCTGGGAGGATTTGACACAGCTCATTCAGCTGCTCGAGCCTATGACAGGGCGGCTATAAAGTTTCGAGGAACAGATGCAGACATAAACTTCAGTATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGGAAGTTAACAAAGGAAGAATTTGTTCATGTTCTTCGTAGACAAAGTACAGGTTATCCAAGGGGAAGCTCAAAATTTAGAGGTGTAACATTGCACAAATGTGGAAGATGGGAGGCTCGTATGGGCCAATTCTTAGGCAAAAAGTACGTTTATCTGGGGTTGTTCGATTCCGAAATCGAAGCTGCAAGAGCTTATGACAAAGCTGCTATCAAATGTAATGGCAAGGAAGCTGTCACAAACTTTGATCCCACCATATATGAGAATGAGCTTACAACAGATACATCATCAGGCAATGTGTTGGAACAAAATCTTGATTTGAGGTTAGGAAATTCAAGCTCAAAGCAACACACAAATGATATGCAAAATAAGGAATCAAATGTACTTGAGAAGATGCAGTTTGGTAGCGAAACGATCATTCGGTGTCCACCCTCCATCGACACAACGATACATGGGCAGTCCCCATATATCAATGAATCAAACTCTGAGATCGATGTGTCGCTGAGTTTGAGTGAAAGGCAGCAATGGCAGCAAGGTTGTGGTGGCTATGAACAAATTGGAACAGCGTCAGCAGCATCATCAGGATTCCCACAAATTCAGGTTTCAAGTTCACCAAATTGGGTGAAGAAAAATAATGGATGCTTCTTAGAGAGACCCTTTTGA | 1284 | 46.88 | MWDLNDSPDHGGTDEFEGLSSIDGDDERAKWVGSINSNSSSSAVILEDGSDADEASVGEREHPISRESFSATHPPETRQFFPLENSNVDASSTGGGSTAFPRARWFGVKFCQTEPVSAVRPMVVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTDADINFSIEDYEEDLKQMGKLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPTIYENELTTDTSSGNVLEQNLDLRLGNSSSKQHTNDMQNKESNVLEKMQFGSETIIRCPPSIDTTIHGQSPYINESNSEIDVSLSLSERQQWQQGCGGYEQIGTASAASSGFPQIQVSSSPNWVKKNNGCFLERPF | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2878935 | 2881530 | - | CmaCh02G005230.1 | Cma02g00523 | 288274 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00523 | 427 | PRINTS | Ethylene responsive element binding protein signature | 234 | 245 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | PRINTS | Ethylene responsive element binding protein signature | 272 | 292 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | CDD | AP2 | 141 | 196 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | MobiDBLite | consensus disorder prediction | 53 | 67 | - | - | |
Cma02g00523 | 427 | SMART | rav1_2 | 141 | 203 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | SMART | rav1_2 | 233 | 296 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | ProSiteProfiles | AP2/ERF domain profile. | 233 | 290 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cma02g00523 | 427 | ProSiteProfiles | AP2/ERF domain profile. | 141 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | CDD | AP2 | 232 | 292 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | Gene3D | AP2/ERF domain | 232 | 291 | IPR036955 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | Gene3D | AP2/ERF domain | 140 | 199 | IPR036955 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | SUPERFAMILY | DNA-binding domain | 232 | 291 | IPR016177 | GO:0003677 | |
Cma02g00523 | 427 | SUPERFAMILY | DNA-binding domain | 140 | 198 | IPR016177 | GO:0003677 | |
Cma02g00523 | 427 | MobiDBLite | consensus disorder prediction | 42 | 76 | - | - | |
Cma02g00523 | 427 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 344 | - | - | |
Cma02g00523 | 427 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 | 1 | 344 | - | - | |
Cma02g00523 | 427 | Pfam | AP2 domain | 232 | 281 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00523 | 427 | Pfam | AP2 domain | 141 | 189 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00523 | Cma-Chr2:2878935 | Cma07g00694 | Cma-Chr7:3053919 | 6.45E-122 | dispersed | |
Cma04g00262 | Cma-Chr4:1293232 | Cma02g00523 | Cma-Chr2:2878935 | 2.16E-09 | dispersed | |
Cma02g00523 | Cma-Chr2:2878935 | Cma03g00966 | Cma-Chr3:6855496 | 2.08E-126 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34445 | PF00847 | AP2 | 1.70E-09 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00523 | K09284 | - | csv:101208665 | 637.106 |