Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00523 ATGTGGGATCTCAATGATTCGCCCGATCATGGCGGAACTGATGAATTTGAGGGCCTTTCGTCGATTGACGGCGATGATGAAAGAGCGAAATGGGTTGGATCAATTAATTCCAACTCGAGCTCTTCAGCAGTGATTTTGGAGGATGGATCCGACGCTGATGAAGCCAGCGTCGGCGAGCGCGAACACCCAATCTCCCGGGAAAGCTTCTCGGCGACCCACCCGCCGGAAACTCGTCAGTTCTTCCCCCTGGAGAATTCCAACGTGGATGCTTCATCAACCGGCGGTGGTTCTACTGCGTTTCCACGAGCTCGGTGGTTCGGCGTGAAGTTCTGCCAGACAGAGCCTGTCTCCGCCGTGAGACCAATGGTGGTTCTGCAACCAATAAAGAAAAGCCGACGAGGGCCAAGGTCTCGAAGCTCTCAATATCGCGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCTCATATATGGGACTGTGGCAAACAAGTTTATCTGGGAGGATTTGACACAGCTCATTCAGCTGCTCGAGCCTATGACAGGGCGGCTATAAAGTTTCGAGGAACAGATGCAGACATAAACTTCAGTATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGGAAGTTAACAAAGGAAGAATTTGTTCATGTTCTTCGTAGACAAAGTACAGGTTATCCAAGGGGAAGCTCAAAATTTAGAGGTGTAACATTGCACAAATGTGGAAGATGGGAGGCTCGTATGGGCCAATTCTTAGGCAAAAAGTACGTTTATCTGGGGTTGTTCGATTCCGAAATCGAAGCTGCAAGAGCTTATGACAAAGCTGCTATCAAATGTAATGGCAAGGAAGCTGTCACAAACTTTGATCCCACCATATATGAGAATGAGCTTACAACAGATACATCATCAGGCAATGTGTTGGAACAAAATCTTGATTTGAGGTTAGGAAATTCAAGCTCAAAGCAACACACAAATGATATGCAAAATAAGGAATCAAATGTACTTGAGAAGATGCAGTTTGGTAGCGAAACGATCATTCGGTGTCCACCCTCCATCGACACAACGATACATGGGCAGTCCCCATATATCAATGAATCAAACTCTGAGATCGATGTGTCGCTGAGTTTGAGTGAAAGGCAGCAATGGCAGCAAGGTTGTGGTGGCTATGAACAAATTGGAACAGCGTCAGCAGCATCATCAGGATTCCCACAAATTCAGGTTTCAAGTTCACCAAATTGGGTGAAGAAAAATAATGGATGCTTCTTAGAGAGACCCTTTTGA 1284 46.88 MWDLNDSPDHGGTDEFEGLSSIDGDDERAKWVGSINSNSSSSAVILEDGSDADEASVGEREHPISRESFSATHPPETRQFFPLENSNVDASSTGGGSTAFPRARWFGVKFCQTEPVSAVRPMVVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTDADINFSIEDYEEDLKQMGKLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPTIYENELTTDTSSGNVLEQNLDLRLGNSSSKQHTNDMQNKESNVLEKMQFGSETIIRCPPSIDTTIHGQSPYINESNSEIDVSLSLSERQQWQQGCGGYEQIGTASAASSGFPQIQVSSSPNWVKKNNGCFLERPF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2878935 2881530 - CmaCh02G005230.1 Cma02g00523 288274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00523 427 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 PRINTS Ethylene responsive element binding protein signature 272 292 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 CDD AP2 141 196 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 MobiDBLite consensus disorder prediction 53 67 - -
Cma02g00523 427 SMART rav1_2 141 203 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 SMART rav1_2 233 296 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 ProSiteProfiles AP2/ERF domain profile. 233 290 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 MobiDBLite consensus disorder prediction 1 24 - -
Cma02g00523 427 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 CDD AP2 232 292 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 Gene3D AP2/ERF domain 232 291 IPR036955 GO:0003700|GO:0006355
Cma02g00523 427 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700|GO:0006355
Cma02g00523 427 SUPERFAMILY DNA-binding domain 232 291 IPR016177 GO:0003677
Cma02g00523 427 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677
Cma02g00523 427 MobiDBLite consensus disorder prediction 42 76 - -
Cma02g00523 427 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 344 - -
Cma02g00523 427 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 344 - -
Cma02g00523 427 Pfam AP2 domain 232 281 IPR001471 GO:0003700|GO:0006355
Cma02g00523 427 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00523 Cma-Chr2:2878935 Cma07g00694 Cma-Chr7:3053919 6.45E-122 dispersed
Cma04g00262 Cma-Chr4:1293232 Cma02g00523 Cma-Chr2:2878935 2.16E-09 dispersed
Cma02g00523 Cma-Chr2:2878935 Cma03g00966 Cma-Chr3:6855496 2.08E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34445 PF00847 AP2 1.70E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00523 K09284 - csv:101208665 637.106