Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00525 ATGAAAGGGGGAGAAGAAGAACGGAGGAATCGGGAGAACACGAAACCGTACAAAGGGATAAGGATGAGAAAGTGGGGGAAATGGGTCGCCGAAATTCGTGAGCCCAACAAACGCTCCCGAATCTGGCTCGGTTCCTACTCCTCTCCCGTCGCCGCCGCTCGAGCCTACGACACCGCCGTCTTCCACCTCCGTGGCCCCTCTGCCCGTCTCAATTTTCCCGACTTTTTCACCGCCGCCGCCGCCACCGACCGCCCCTTCCCCTTCCCTGCCGACATCTCCGCCTCCACCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCGTGTCGACGCCCTCGAGTCCTCTCTCCGTCACCACTTCCACAACTGTAGAACCGCCGACCAAACTCACCAAACTCCTTCCCTGTCGCCAACCACGACCACGACACCCACGAAGCTTCGTTCTGATTCTGGCGGGTTTTCCGACCGGGTTGACCTGAATAAATTGCCCGACCCGGAAGATTCCGACGGCGACTGCGCTAGCACTCCCTGGATAACCTGA 537 60.71 MKGGEEERRNRENTKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPDFFTAAAATDRPFPFPADISASTVRKIAAEVGARVDALESSLRHHFHNCRTADQTHQTPSLSPTTTTTPTKLRSDSGGFSDRVDLNKLPDPEDSDGDCASTPWIT 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2895061 2895597 - CmaCh02G005250.1 Cma02g00525 288276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00525 178 MobiDBLite consensus disorder prediction 150 167 - -
Cma02g00525 178 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Cma02g00525 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 168 - -
Cma02g00525 178 MobiDBLite consensus disorder prediction 125 148 - -
Cma02g00525 178 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Cma02g00525 178 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Cma02g00525 178 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cma02g00525 178 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Cma02g00525 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 5 168 - -
Cma02g00525 178 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Cma02g00525 178 MobiDBLite consensus disorder prediction 122 178 - -
Cma02g00525 178 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Cma02g00525 178 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01826 Cma-Chr1:12101981 Cma02g00525 Cma-Chr2:2895061 4.08E-47 dispersed
Cma02g00525 Cma-Chr2:2895061 Cma07g00693 Cma-Chr7:3047127 1.90E-57 dispersed
Cma12g00563 Cma-Chr12:2940087 Cma02g00525 Cma-Chr2:2895061 6.41E-10 dispersed
Cma02g00525 Cma-Chr2:2895061 Cma03g00965 Cma-Chr3:6844657 1.51E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34446 PF00847 AP2 1.20E-10 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00525 K09286 - csv:101209150 212.616