Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00531 ATGAGAGCTCATCGTTTGAGCTTCTTCATTTTCTCTCTCTCATTATTCACTTCATTCATCGGAGCCTTCCCGCGTCTTCGCGATTCTGGCATTTCAACTAGGAGGATTCTGCATCAGCCTCTCTTTCCGATAGGCTCTGAGCCGCCGCCGGATATTGAGTTAACCCCACCGCCGCCGCCGCCTCCTGACTCTACCTCCAACGTACCGCCGTTTTTCCATGACCCGCCGACCACTCAAGATCAGACTCAACCGCCTCCTCCGTCTACCAATGGAACTATGCCTATCCCTGCTGCTACGGCGCAACAATCCAAGCCGACGAAGACTGTTGCGATTGCAATTTCGGTTGGGATTGTGACTTTGGGGATGCTCTCTGCTCTGGCGTTTTTTCTGTATCGTCACCGGGCAAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATCCGGAGAGATTTCCGGAGGATTCGCGAGCGCCGCCGTCGAGTTTTTTCTATATTGGGACTGTGGAGCCGAGCCAGAGCTCTGTTGTTGAGCAGAATGGTGCTAATAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGATGTCGGATCGGTACCGGCCGAGTCCGGAATTGCAGCCGCTGCCACCTCTGCCGAAGCCGCCTATGGCTATGTCGCCTCCCGCTCTGTCATCTTCGGATGATGAAAGCCAGAATACGGCATTCCATACTCCACAATGCTCGTCAATTGTCAGTCATGATGATGGCTATTTCTCACCGGCTTCTCGTCGAAGTAATTCTGTTAAGAGCTGTTCTACGGCAAGTTTTAAGAATGACCATATGAATTCCAATGCTCCTCCTGTTCCTCATTCTAAAAGAACCTCCCCAAAATCTAGATTCTCGGTTTCTTCGACCAAACGCAATACGTCTCAGCCTCAGCCACCACCGCCGCCGCCTCCACCGCGTCCGCTTGATGACTTTCGTGAAATTCCGAATTCGAAAGAAACAATGCCTTTCTCTTCCACGAGACCTAAGTTTTCGAAGCCTCCGCCTCCACCAAATTTGGCGCTTCTTCAAACAATTAGCAATTCCGCCACATATCCTCAAATTCAGAAAACTGCTGCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACGGCCACCTCCACGGCCACCGTCGCATCCGGTTTCGTATTCAACGCCACAAAAACTAGGGTTATCGGAAACCAGAATGCCGACAGTCACTCCTCCAGATTCCTCCAAGTCACAATCCTATTCAACAGCGAGAACAAACTCATCTTCCAAATCCACACCGACATCTGCACCAGCAGATTCCGCTAAAGAAGATGTTGTCGAAAGGATTAATTCGATGGAAAGGCTTGAAGCCGAAGATACAGAAGGTTCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGGGCAACCTCAGACCGAGCTACAGTTTGGGATCAACTCAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAAACACTTTTTGGCTTCAATTCTGCAAGTTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGATCCCAAAAAGTCGCAGAACATTGCAATACTCCTAAGAGCTCTTAATGTCACGCGTGATGAAGTGATCGAAGCTCTTCAAGATGGTAACCCGGAAGGGTTTGGTACCGAGCTTTTAGAAACGCTAGTGAAGATGGCTCCAACCAAAGAAGAAGAGATAAAACTGAGAGAGTACTGTGGCGATGGTTCAAAATTAGGGACTGCAGAAAGATTTCTGAAGGCAGTGCTTGAAGTCCCATTTGCCTTTAGAAGAGTTGAGGCCATGCTGTACAGAGCCAATTTTGATTCAGAAGTGAAGTATCTAAGGAAGTCATTTCAAACGCTTGAGGTTGCAAGTGAGGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACAGGAAATAGGATGAATGTCGGTACGAATCGTGGTGATGCTAAATCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATAAAGGGAACGGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATTATCAGATCAGAAGGTGGTGCTGATTCAACTAGTGACAACCTTCAACCCCGTTCGCAATCCAAAATCGAGGATGAATTTAGAAAGCAGGGCTTGCAGGTTGTGGCTGGACTGAGCAGAGACCTTAGCAATGTGAAAAAAGCAGCTGGTATGGACTCGGACGTCTTGAGCAGCTATGTCACAAAGCTCGAAATGGGGCTTGAAAAAGTAAGGATGGTTTTGCAATTCGAAAAGCCAGGAATGCATGGAAAGTTCTTCGACTCGATGAAAACATTCTTGAAGGAGGCAGAAGAAGAAATAGTTAGGATCAAGGACGATGAAAGGAAAGCTTTATCTCTGGTGAAAGCGGTCACGGAGTATTTCCATGGCGACGCTGCCAAGGAGGAAGCTCATCCGTTCCGAATCTTTATGATCGTTCGGGATTTCTTAACCATACTAGATCAAGTATGCAAAGAAGTTGGGAGAATGCAGGACGGGGTAATGGTGGGTGCTGCAAGATCCTTTCGGATATCGGCAACAGCCTCCCTCCCAGTCCTCAGCAGGTACAACGTCAAACACGACCGAAGTTCCGACGAGGATAGCTCATCTCCGTAA 2715 47.81 MRAHRLSFFIFSLSLFTSFIGAFPRLRDSGISTRRILHQPLFPIGSEPPPDIELTPPPPPPPDSTSNVPPFFHDPPTTQDQTQPPPPSTNGTMPIPAATAQQSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNPERFPEDSRAPPSSFFYIGTVEPSQSSVVEQNGANSSPYRKLNSIKMSDRYRPSPELQPLPPLPKPPMAMSPPALSSSDDESQNTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNAPPVPHSKRTSPKSRFSVSSTKRNTSQPQPPPPPPPPRPLDDFREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSATYPQIQKTAAPPPPPPPPPPPPRPPPRPPSHPVSYSTPQKLGLSETRMPTVTPPDSSKSQSYSTARTNSSSKSTPTSAPADSAKEDVVERINSMERLEAEDTEGSKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSASSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDGSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEVASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKSFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTSDNLQPRSQSKIEDEFRKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYVTKLEMGLEKVRMVLQFEKPGMHGKFFDSMKTFLKEAEEEIVRIKDDERKALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVKHDRSSDEDSSSP 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2928979 2932827 - CmaCh02G005310.1 Cma02g00531 288282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00531 904 Coils Coil 439 459 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 366 392 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 42 106 - -
Cma02g00531 904 SUPERFAMILY Formin homology 2 domain (FH2 domain) 371 864 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 199 445 - -
Cma02g00531 904 Pfam Formin Homology 2 Domain 461 853 IPR015425 -
Cma02g00531 904 Coils Coil 800 820 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 224 303 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 351 365 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 43 69 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 139 160 - -
Cma02g00531 904 SMART it6_source 458 868 IPR015425 -
Cma02g00531 904 MobiDBLite consensus disorder prediction 175 194 - -
Cma02g00531 904 Gene3D Formin, FH2 domain 451 864 IPR042201 -
Cma02g00531 904 MobiDBLite consensus disorder prediction 393 439 - -
Cma02g00531 904 PANTHER FORMIN-RELATED 9 904 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma02g00531 904 ProSiteProfiles Formin homology-2 (FH2) domain profile. 458 879 IPR015425 -
Cma02g00531 904 MobiDBLite consensus disorder prediction 175 192 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 204 220 - -
Cma02g00531 904 PANTHER FORMIN-LIKE PROTEIN 6 9 904 - -
Cma02g00531 904 MobiDBLite consensus disorder prediction 304 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01155 Cma-Chr1:8438441 Cma02g00531 Cma-Chr2:2928979 1.45E-122 dispersed
Cma02g00145 Cma-Chr2:691274 Cma02g00531 Cma-Chr2:2928979 3.16E-115 dispersed
Cma02g00531 Cma-Chr2:2928979 Cma02g01659 Cma-Chr2:9391890 1.06E-163 dispersed
Cma05g00928 Cma-Chr5:7504702 Cma02g00531 Cma-Chr2:2928979 2.59E-83 dispersed
Cma02g00531 Cma-Chr2:2928979 Cma19g00185 Cma-Chr19:1217972 7.20E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00531 - - cmo:103497354 1394.41