Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00539 ATGGATACTTTGTTCAGGCTTGTCTCCAACCTTCAACCTTCTGATCAATCTTACAACTCAAGCACCAGCTCCAAGAATTCTGTCGATCTTCAAAATCATTGTTTCCTTAACCCACCACCACCTGAACAATGCTTCACCAGCTCATTCATGGTGGATCAACCACATTTCTCTGCCTCCTCTTCTTCCAACCATCGTCCTGATAAGGACCATGTTCATCAAGATCACGAGTATATAAGTACTATCAATTCGACTGATCGCTGGTTCGCCCCTTTAGACGTGAACTTGGAATTCTCTAATGGTTGGGCTTCTACGTTGATTGTCCAAACTGCCATTGCCATTGTTGATAACAACGCTTCTCAAATCCAACAACTCATGTGGATGCTTAACGAGCTCGGTTCACCCTATGGCGACATTGATCAAAAACTAGCTTTTTACTTTCTTCGAGCTATGTTTAGTCATGTCACGAACTCTGGTGAACGGTGCTACCAGACCTTGGCAATGGTGTCGGAGAAACGGTCTTGTTTCGCGTCGATGAGAAGAATGGTGTTGAAGTTTCAAGAGGTGAGTCCATGGATGACGTTTGGTCATGTTGCTTCAAATGGTGTTATCATGGAGGCTTTTGAAGGAGAAAAGAAGTTGCATATAATTGATATTAGCAACTCCTTTTGTACTCAATGGCCGACTTTCCTTGAAGCTCTAGCATCTCGGTCAGACGAAACTCCACACCTTAGGCTCACGACGCTAGTCGTAGCGAGATCGGATAAGAAGATGATGAGAGAAATTAGCAGAAGAATGGAGAAATTCGCGAGGCTTATGGGGGTTCCCTTCAAATTCAAAGCAATATATTACTCCGGCGATATTTCACAGCTAAATTTCACGGAGTTAGGGGTTAATGACGACGAAGCCCTTGCCATTAACTGCGTCGGCGCCTTCCGCTCCGTCACGCCCGTCGACAACCGCCGCGATTTTCTGATTTCGCTGTTCGGAGCTTTGCGGCCGAGGATAATCACTGTGGTGGAGGAGCAGGCAGATCTCGATAGCGACGGCGTTGACTTTGTCAAAGACGTTCAAGAATGTTTACGGTGGTTTAGGGTTTACTTTGATTCCTTGGACGGAAGTTTCCCTTCCACAAGTGATGAAAAGTTGATGCTCGAACGCGCCGCTGGACGCGCTATCGTGGACTTGCTTGCACGCGCGCCAGCGGAGTGTGTTGAGAGGCGCGAGACGGCTGCGCGTTGGGCTCGTCGTTTGCATGAGGGTGGTTTTAAACCGGTGTCGTTTAGTGAGGATGTAAACGACGACGTACGTGCGCTTTTAAGGAAGTATAAGGATGGGTGGACGGTGTTGGATGACGGCGAGGGCGCCGATGCCGGAATTTTCTTGGCTTGGAAGGGGCAGGCGGTGGTTTGGGCCGCCGCATGGACGCCTGAACCACTGGACGGAGAGAAGAGTCGCCAGAGTAGTTGTTCACATTGA 1476 48.51 MDTLFRLVSNLQPSDQSYNSSTSSKNSVDLQNHCFLNPPPPEQCFTSSFMVDQPHFSASSSSNHRPDKDHVHQDHEYISTINSTDRWFAPLDVNLEFSNGWASTLIVQTAIAIVDNNASQIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGERCYQTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVVARSDKKMMREISRRMEKFARLMGVPFKFKAIYYSGDISQLNFTELGVNDDEALAINCVGAFRSVTPVDNRRDFLISLFGALRPRIITVVEEQADLDSDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLERAAGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRKYKDGWTVLDDGEGADAGIFLAWKGQAVVWAAAWTPEPLDGEKSRQSSCSH 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2967857 2970156 + CmaCh02G005390.1 Cma02g00539 288290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00539 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 475 IPR005202 -
Cma02g00539 491 ProSiteProfiles GRAS family profile. 93 475 IPR005202 -
Cma02g00539 491 PANTHER PROTEIN SHORT-ROOT 1 475 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cma02g00539 491 Pfam GRAS domain family 104 475 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00539 Cma-Chr2:2967857 Cma03g00918 Cma-Chr3:6636169 0 dispersed
Cma02g00539 Cma-Chr2:2967857 Cma07g00650 Cma-Chr7:2839388 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34447 PF03514 GRAS 5.30E-95 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00539 - - cpep:111795097 936.021