Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00561 ATGTCACAACAAGACTACCACCAGGCGGCGGCGGCGGCGGCGGCAGCAACCTTCTTCACACCCTTCACGAATGGCTTTGACAGATCCTCCACCACCGCCACTGCCTCCCACCAAGACCCTCAACATCAACACTACAACCACATAGCCCACCAGATCCGAAAGGAGAAGCTCCGCCTCCAAGGCTTAGACCCGCCGCCTCCCCAGCCGTCCTTGGTCGGAATTGAGGAGGAGGAGGACGACCAATCCGCTGGCGCTGCTGCCCTTCACCACGTCTATGACTCCACTGGAATTTTATCTGAAATGTTCAATTTTCCTCAGCCTCAACGGCCTCAAGCTGAGTGGTATGGCAACCGGCAAGAGATTAACGCCAGTGACTCGGCGGTGGCCATGCAGCTTTTTCTGATGAACACAAACCCTCGCTCACCGCCACCGCCGCCCGTGTCCTCAACCCTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTAGTTCCGGAACAAGAAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACTATTCTTCCTCAAACCCTAACGAAGGCCGTCTTTCTCTGTCATTATCCTCGTCCATAGAAGCTGCAAAAGCGGAGGAATTGAGAATGGGTGACAGCGGGTTAGTTTATCAAAACCAACATCACCCTCAACAAGTCCAGGTTGGAATTGGGTCTTCTTCTAATTCTTCCTTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTCAAACCCGCACGAGAATTACTGGAGGAGTTTTGTAGCGTTGGAAGAGATCAGCTTAAAAATAATAATAACAAATTCAATAAGTCAAATTTGACCTCCAACTCCAACTCCCATGGCGGGGACGGCGGCGGAGGAGGAGTCTCGTCCTCGACGTCAAAGGATCAACCGCAGCCACCGCCACCGCCCGCTTTGTCAGCCGCTGATAGAAATGAACATCAAAGGAGGAAGGTCAAATTGTTATCCATGCTTGATGAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAATTCATTCGACGTCGTGATGGGGTTCGGGGCAGCGGTGCCATACACGGTGTTGGCACAGAATGCGATGTCGAGGCATTTCAGATGTTTGAAGGATGCCATAACAGCGCAGCTGAAGCATAGTTGCGAGATGTTGGGCGAGAAAGATGGGAGAGGAGGTGGAGGAGGGTCAGGAATAACTAAGGGAGAGACTCCAAGGCTTAAGCTGTTGGAGCAAAGGTTGAGGCAGCAACGAGCCTTCCACCAAATGGGAATGATGGAACAAGAAGCTTGGCGTCCCCAACGCGGCTTGCCCGAACGCTCTGTCAACATCTTGCGTGCCTGGCTCTTCGAGCACTTTCTTCACCCGTACCCTAGTGATGGTGATAAGCATTTGTTGGCGAGACAGACAGGTTTATCAAGAAATCAGGTATCCAACTGGTTTATTAATGCCAGGGTTCGGCTGTGGAAACCCATGGTGGAAGACATGTATCAACAAGAAGCCAAACAACATGAAGAAGAAGAAGAACAAGATGATGATCATAATAATATTAATAATAATAACAATACAGATGAGGACACACAATCCAATCCTCCGCCCACTTCCTCCGCCGCACCACCACCACCACCACCCTTCTCATACTACTACTCCTCCTCCTCCTCCTCCTCCGCATCCACTGCCGTAACCCAGGCGGCTGTGGCGAACTGCTTTCCGGCCACCCAGTATGAGTCAGAGCTGCAGGACACGTGTCGGCGTGTCAGCGTTCTCACTGCACCTGATCAGCAGATGAGGACCACAAGCGGCTCAGCCAAGTCTGACATCCCCGGGCCCACCAGACTCATAAGATTCGGGACCACATCGGGTGACGTGTCGCTGACACTAGGTTTACGCCACGCCGGAAATATCCCCGACAACAACCCTTCTTTCTCCCTCAGATCCGAGTTCGGAGGCTGTTAA 2007 52.12 MSQQDYHQAAAAAAAATFFTPFTNGFDRSSTTATASHQDPQHQHYNHIAHQIRKEKLRLQGLDPPPPQPSLVGIEEEEDDQSAGAAALHHVYDSTGILSEMFNFPQPQRPQAEWYGNRQEINASDSAVAMQLFLMNTNPRSPPPPPVSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGGGGGGGGGGDYSSSNPNEGRLSLSLSSSIEAAKAEELRMGDSGLVYQNQHHPQQVQVGIGSSSNSSLGVVNLLRNSKYVKPARELLEEFCSVGRDQLKNNNNKFNKSNLTSNSNSHGGDGGGGGVSSSTSKDQPQPPPPPALSAADRNEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVVMGFGAAVPYTVLAQNAMSRHFRCLKDAITAQLKHSCEMLGEKDGRGGGGGSGITKGETPRLKLLEQRLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDGDKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEAKQHEEEEEQDDDHNNINNNNNTDEDTQSNPPPTSSAAPPPPPPFSYYYSSSSSSSASTAVTQAAVANCFPATQYESELQDTCRRVSVLTAPDQQMRTTSGSAKSDIPGPTRLIRFGTTSGDVSLTLGLRHAGNIPDNNPSFSLRSEFGGC 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3177948 3181970 - CmaCh02G005610.1 Cma02g00561 288312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00561 668 SMART prehox3 245 393 IPR006563 -
Cma02g00561 668 SMART HOX_1 448 512 IPR001356 GO:0003677
Cma02g00561 668 ProSiteProfiles 'Homeobox' domain profile. 445 508 IPR001356 GO:0003677
Cma02g00561 668 Gene3D - 451 513 - -
Cma02g00561 668 MobiDBLite consensus disorder prediction 515 569 - -
Cma02g00561 668 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 655 - -
Cma02g00561 668 MobiDBLite consensus disorder prediction 274 309 - -
Cma02g00561 668 CDD homeodomain 448 509 IPR001356 GO:0003677
Cma02g00561 668 MobiDBLite consensus disorder prediction 274 329 - -
Cma02g00561 668 MobiDBLite consensus disorder prediction 550 564 - -
Cma02g00561 668 Pfam Homeobox KN domain 465 504 IPR008422 GO:0003677|GO:0006355
Cma02g00561 668 SUPERFAMILY Homeodomain-like 449 515 IPR009057 -
Cma02g00561 668 Pfam Associated with HOX 251 392 IPR006563 -
Cma02g00561 668 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 72 655 - -
Cma02g00561 668 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00561 Cma-Chr2:3177948 Cma07g00746 Cma-Chr7:3306916 1.43E-149 dispersed
Cma02g00561 Cma-Chr2:3177948 Cma20g01145 Cma-Chr20:9080279 0 wgd
Cma02g00561 Cma-Chr2:3177948 Cma03g01027 Cma-Chr3:7153378 2.41E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34450 PF07526 POX 4.40E-51 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00561 - - cmax:111470356 834.713