Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00577 ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACCCTCACTACTCTCCACTCCCATTTTTCTCCGACTTCTCATCTCTCTCCTTCCACACCGAACAGCCAGCACTGCCGAACCACCACCACCGCCAGAAGCGCGGCGGCGGGGGCGGCGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAAGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCCGCACGGCACCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATACTACTAATAATAACAACTGTCCTAACCTTAGTTATTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA 603 52.07 MDDIDILKSTLSPSNSIDMSSTILLNNNNPHYSPLPFFSDFSSLSFHTEQPALPNHHHRQKRGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNNNNCPNLSYSSALFKACQMPHAPSMPGSLQMH 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3330367 3330969 - CmaCh02G005770.1 Cma02g00577 288328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00577 200 Gene3D - 101 171 IPR036638 GO:0046983
Cma02g00577 200 Pfam Helix-loop-helix DNA-binding domain 111 151 IPR011598 GO:0046983
Cma02g00577 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 151 IPR011598 GO:0046983
Cma02g00577 200 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 43 179 IPR045843 GO:0003700|GO:0006355
Cma02g00577 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 161 IPR036638 GO:0046983
Cma02g00577 200 SMART finulus 108 157 IPR011598 GO:0046983
Cma02g00577 200 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 43 179 - -
Cma02g00577 200 Coils Coil 141 161 - -
Cma02g00577 200 CDD bHLH_AtIND_like 103 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00081 Cma-Chr1:372046 Cma02g00577 Cma-Chr2:3330367 4.03E-34 dispersed
Cma02g00577 Cma-Chr2:3330367 Cma05g00179 Cma-Chr5:758601 2.53E-46 dispersed
Cma02g00577 Cma-Chr2:3330367 Cma03g01089 Cma-Chr3:7466835 5.58E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34452 PF00010 HLH 7.20E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00577 - - cmos:111451594 330.102