Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00584 ATGGATGACAACAAGCCATTGGCGGCCGCGATTCTCATTCAAACCATCTACGCCGCCATGTTTCTTCTCTCCAAGGCCGCTTTTGACGGCGGAATGAACAATTTCATCTTCACTTTCTACCGCCAAGCCTTCGCCACCATCTCTCTCTCTCCCGTTACCTTCTTTTTCAAATGGAAAACTGCCCCACCCTTGACATTCTTCACCTTCTGCAAAATATTTTTGCTTTCATTTTTTGGGATTGCTGTTTCTTTAAATCTTTATGGGGTTGCTCTTGTGTATACATCGGCAACGTTAGCGGCAGCCACTACGAATTGTCTTCCGGTTATAACGTTCTTCGTCGCGCTTTTGCTTAGGCTTGAGGTGTTGAGGTTAAAGTCCATAGCAGGAATAGCAAAGCTTGCAGGCATAGTTTTATGCGTCGGCGGTGTGGGGATATTGGCATTCTACAAAGGCCCACAACTCAAATGGTTCAATAATCATCACCTCTTTTCTGCCCATAACGCCGCCACCCACGCCCACTCTGCCACTGCAGCTTCCACCAGCTCTTGGCTCAAGGGCTGCTTTTTGATGCTGTCTTCCAATACCCTTTGGGGCATTTGGATTGTTCTTCAGACATTTGTGCTCAAAAGCTATCCATCCAAGCTTGTGTTGACAAATCTTCAGTGTTTGTTGAGTTCATTTCAAACATTTGCTATTGCTATTGCAATGGAGAGAGACCCTCAAGAATGGAAATTGGGGTGGGATGTTAGGCTTCTTTCAGTGGCATATTGTGGTGTTGTGGTGACTGCTGTTACGTATTGCCTTCAAGCATGGATAATTGAGAAGAAAGGCCCCGTTTTTCTTGCAATGTCTACGCCCTTTTCTCTAGTTATTACCACAGTCTGTTCCGCTATCCTTCTTGGTGACAGTATCACCCTTGGAAGTGGTTTGGGCGGAATTTTATTGGTGGGAGGGCTATATTTTGTGCTATGGGGGAAGAGCAAAGAGCAAAAGATAAGTGAAGGGTTGAAAGAAGGTGGCAAAGAATGCAGCATGCAACAACACAAGGAGAATACAAAATTAGGAGATCAAAATTCAGCATCTCCCATTGAAAATGTCTAA 1101 44.87 MDDNKPLAAAILIQTIYAAMFLLSKAAFDGGMNNFIFTFYRQAFATISLSPVTFFFKWKTAPPLTFFTFCKIFLLSFFGIAVSLNLYGVALVYTSATLAAATTNCLPVITFFVALLLRLEVLRLKSIAGIAKLAGIVLCVGGVGILAFYKGPQLKWFNNHHLFSAHNAATHAHSATAASTSSWLKGCFLMLSSNTLWGIWIVLQTFVLKSYPSKLVLTNLQCLLSSFQTFAIAIAMERDPQEWKLGWDVRLLSVAYCGVVVTAVTYCLQAWIIEKKGPVFLAMSTPFSLVITTVCSAILLGDSITLGSGLGGILLVGGLYFVLWGKSKEQKISEGLKEGGKECSMQQHKENTKLGDQNSASPIENV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3403872 3406099 - CmaCh02G005840.1 Cma02g00584 288335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00584 366 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020|GO:0016021
Cma02g00584 366 Pfam EamA-like transporter family 7 131 IPR000620 GO:0016020|GO:0016021
Cma02g00584 366 PANTHER WAT1-RELATED PROTEIN 7 339 - -
Cma02g00584 366 MobiDBLite consensus disorder prediction 335 366 - -
Cma02g00584 366 PANTHER WAT1-RELATED PROTEIN 7 339 IPR030184 GO:0016021|GO:0022857
Cma02g00584 366 MobiDBLite consensus disorder prediction 335 349 - -
Cma02g00584 366 MobiDBLite consensus disorder prediction 350 366 - -
Cma02g00584 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 150 - -
Cma02g00584 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00584 Cma-Chr2:3403872 Cma07g00781 Cma-Chr7:3534105 2.46E-120 dispersed
Cma20g01078 Cma-Chr20:8194342 Cma02g00584 Cma-Chr2:3403872 5.44E-16 dispersed
Cma02g00584 Cma-Chr2:3403872 Cma20g01077 Cma-Chr20:8164616 8.45E-113 wgd
Cma02g00584 Cma-Chr2:3403872 Cma03g01072 Cma-Chr3:7376133 5.33E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00584 - - cmos:111451464 647.506