Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00585 ATGAGGCTCTTCTCCTCCTCAACTTTCTCGCTTTCTTCTCTCTGTTCTTCTTCTCCACCGCGCGCCCTCTTGCTTCACTTTTCTCATTCAGCTTCTTTTTCTTCCAGTAATTACTCTTTCCCTTCCTCATCTTCTTCTAGGCGCTACGACGAAGAGTCTCGATATGTCAGGGTTTCGGTTTGGTGGGACTTCGAGAATTGCAACATTCCTGCAGGTGTTAACGTGTTTAAGGTCGCCCATTTGATCACTGCCGCTGTCAGGGCCAATGGTATCAAAGGTCCGGTTCAAATTACTGCTTTCGGTGACATTTTGCAGCTCTCAAGGACCAACCAGGAGGCTCTCTCGTCTACTGGAATTAGCCTTACCCACATTCCTCAAGGTGGTAAAAACAGTGCTGATAGGTCTCTTCTTGTAGATCTCATGTGTTGGGTTTCACAAAATCCTCCACCAGCACATCTTTTTCTAATTTCTGGTGACAGGGACTTCGCCAGCATTTTGCACCGCTTAAGAATGAATAACTACAATGTGTTGCTAGCAAGCCCTGAAAGTCCTCCTGGTGTTTTATGCAGTGCTGCAAGCATCATGTGGCATTGGAATGCTCTGATTAAAGGGGAAAATCTAGTCGGAAGGCATTTTAATCAACCACCTGATGGACCGTATGGTTCTTGGTATGGCCATTATAAAGTTCCTCTTGAAGACCCATTTCCAGTTAATGAGCAAGCATCTTCTATTCGATCCGAGGAGGTTTCTGAGATCAGTTCAGATCCTAAGCCTCTTTCCATTCCAAGGGCAGTCATTAGGGAAATACGTTACATTTTGAAATTATATCCAAAAGGAATCTCCATTACAGATCTCCGATCAGAGTTGGGAAAGAGTAAAATATCTATAGATAGGGACTATTATGGTTACAAAAAGTTTTCACGCTTTCTATTGTCAATGCCACATATTTTAAAGCTTCAAACAAATGGTGATGGCCAATTGATCGTCCGAATTGTCACTCCAAGGACCATAGAGCCATTTGAGTCCAGTAGAGGTACATCTGATAATGATGGCACTGAAGAGCAGGATCGTAATCTGATTGCAAAGTTAAACAATAACGATTCCTCACCAGAATCGACGAGTGTACCACTCGTTCGATCTAGTGAACTAAATGCTCAAGACAGGCCAGAGAAGGTGCAACCATCTTATGAATTAGTCAAGTCTACTGGTGAAGCTATGGGAGGGGAACCATCAACATGGCCGGTTTCTGAGTCACGTGTTCTGGAAGATTCAAAGCAGACTAGTAAATTTGAAGCTGACAATAATGTGATTCCTTCAATTGAACAGCATTCTGAGGCCAAGACGGGGTTTTTTAGAAGAATATGGAGAAGGTTTGTTGTAGGTAGCAAAGACCATAATTCTGAAAATGGAAGTCATCACATTTCTGAAAAATGTTCCACATCAGATGATGCTTCTAAGCAGAAAAGTTGTGGCCATGTGACGAATTATTCTAATCAGAACCTTGGAGAAGCAAAAAGTGAAGGAAAAACTGTAAAGCCAATGAGTCAAGATGCTAATTCAGTGCGTCCAGTTTCAAATTCACCTGATCGTGAGCCTGCTAAGCTTCAAAAAACAGCTGTAGTTGCTAGTGCATATGATGATAAATCAAGATCTAGGCCAGGAGCACTTAGTAGCATTAGAAATTGGTTCAAGATTCGGGAAAATGATACAGAGACTGGTAAAGAAAGCGAGCACTGTTGCGAACAGAACCAGTTAAAAAATGAATGTGGGAAACATCGACTTTTTTCCAGCAATTCTTTTTGGCAGGACATGCAATCCTTTATTGAAACACCTAAAGGAGTGGAGCTCATTTTGCAGTCAAAAACCAGGTCAGAGATGGCTCAGAAACTGCTAGAGGGAGGACCTTTGGTTCTTAAATCCTTAAGCTCTAGCGAGCTCTTTGACTTTATAGAATCGTTAATATCAGATAAGAAATGGCTCGTGGAATGCCCCTCTGAAACAAATCCTTTTAAGGTCACTCTCTCTACTGCTGAGACAAGCTCTTGCACGAAACCCCTGCATCGTGCAAATGGGTTGACATCAATCTTTATGAACAAAGTATCACAGCCCAGTTTACAGGGATCTTCAGAACATGATTCAGATTCAGATAAGAAAAATGAAAATATTCCTCAAGCTGGAATTTCTACCACTATGACTAAAAGCAAGTTTCCAGAGAGGACAAGAAGTGAAATATTATGCGACTGTCAAAATCTTGTGGACGCAATCTTGAGGGAACACCCAGAAGGATATAATATGGGGGCTTTCAGAAAACTGTTTCTTGAGAAGTACGGATATCATCTTGACTTGCAGAAGCTTGGTTACCCAAAGTTGGCATCCCTGCTACAGATAATGCCTGGAGTGACAATAGAATCCACTTTTATAGTTCCCACCGGTAAGGTCCCAAAGGTTTCCCATGTTGTAGCAAACTCTGATAACGAATCATCTGACCTGCCTCGAAAGGATGATGATTTTGAGTCAACATGGGAAGAATTAGGTCCAGCATTCACAGATTGCAGGAGCAGAAACGAAGATGAATCGACATCGAGTAGTGAAACAGCAGAAGCAACAGAAAAACGACCAAAAGTTTGTTATGAACCTGTGGTTTTAGAGGATGAATCATCAACAGAGTCTGATGGAGAGTCTTGTCCTACTACACAGAGATCAGCAGAGCAAGCAAAGCCACAAACAAATAAGGAAGAAAGCCCATTACTACAGATCCTTGATTCATGGTATGGCAACAAAGAAGACATTAGTAGCAAAAACAAGTCGGAAAACAGCGACGAGATGAACGGTTGTTTTGAAAATAGTTTGAAGGTCTCTAGTTTAACAGCCAAAAATGAAGCAAATACAGGAAGCTTTGCTCAAAAGCATAGACATCAAAAGAACTATTCTTTTGTTTTAGACACGGATGAAAATGACAAAGAAAAGCTGATTGATGGGATTTTGGGTACCTTGAAGAAATCGAGCAAGTCCCGGAGCATAAGTTTCCAAATTCACAAAGAAAATGGTGGCGATGATGTGAGTATCAAAGTCCTTTACTGTGGGGTTTGCCATTCAGATCTGCATCTGCTGAAGAACGATTGGGGTGTCACAGATTATCCAATAGTCCCAGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGGAACAATGTGAACAAATTCAAAGTGGGCGATCAAGTAGGGGTAGGTGTCATAGTTGGATCTTGCAAAAGTTGCCAAAACTGCGAACAAAACTTAGAGAATTACTGCCCCAAGTTGATATATACTTACAACGGACATTCATATGATGGAGCAAAGACTTACGGTGGTTATTCTGATAGCATCGTCGTCGATCAGCATTTCGTTCTCCGATTTCCCGACAACTTACCCCTTGATGCCGGAGCTCCACTTCTGTGCGCTGGAATCACAATCTATAGCCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGATTGAAAGTTACTGTCATTAGCACGTCTCCGAGAAAGAAGGAGGAAGCTATCAACAGGCTTGGTGCCGATGCTTTCGTTGTTTCGAGTGATCCTGCACAATTGAAGCTGAATGGAAAATTGGTGACTGTGGGGTTACCTAACAATCCACTAGAACTGCCAGTTGCTTCGATAGTATTCGGTAGGAAGATGGTTGGTGGAAGCAACTTTGGAGGGCTGAAAGAGACACAAGAGATGTTGGATTTCTGTGGTAAACATAACATCACAGCGGAGATTGAGCTGATTCGTATGGACGATATTAACACCGCCATCGAACGCCTTGAGAAAGCCGATGTTCGATATCGGTTCGTGATTGACATTGGAAACTCCTTCAAATAG 3936 42.2 MRLFSSSTFSLSSLCSSSPPRALLLHFSHSASFSSSNYSFPSSSSSRRYDEESRYVRVSVWWDFENCNIPAGVNVFKVAHLITAAVRANGIKGPVQITAFGDILQLSRTNQEALSSTGISLTHIPQGGKNSADRSLLVDLMCWVSQNPPPAHLFLISGDRDFASILHRLRMNNYNVLLASPESPPGVLCSAASIMWHWNALIKGENLVGRHFNQPPDGPYGSWYGHYKVPLEDPFPVNEQASSIRSEEVSEISSDPKPLSIPRAVIREIRYILKLYPKGISITDLRSELGKSKISIDRDYYGYKKFSRFLLSMPHILKLQTNGDGQLIVRIVTPRTIEPFESSRGTSDNDGTEEQDRNLIAKLNNNDSSPESTSVPLVRSSELNAQDRPEKVQPSYELVKSTGEAMGGEPSTWPVSESRVLEDSKQTSKFEADNNVIPSIEQHSEAKTGFFRRIWRRFVVGSKDHNSENGSHHISEKCSTSDDASKQKSCGHVTNYSNQNLGEAKSEGKTVKPMSQDANSVRPVSNSPDREPAKLQKTAVVASAYDDKSRSRPGALSSIRNWFKIRENDTETGKESEHCCEQNQLKNECGKHRLFSSNSFWQDMQSFIETPKGVELILQSKTRSEMAQKLLEGGPLVLKSLSSSELFDFIESLISDKKWLVECPSETNPFKVTLSTAETSSCTKPLHRANGLTSIFMNKVSQPSLQGSSEHDSDSDKKNENIPQAGISTTMTKSKFPERTRSEILCDCQNLVDAILREHPEGYNMGAFRKLFLEKYGYHLDLQKLGYPKLASLLQIMPGVTIESTFIVPTGKVPKVSHVVANSDNESSDLPRKDDDFESTWEELGPAFTDCRSRNEDESTSSSETAEATEKRPKVCYEPVVLEDESSTESDGESCPTTQRSAEQAKPQTNKEESPLLQILDSWYGNKEDISSKNKSENSDEMNGCFENSLKVSSLTAKNEANTGSFAQKHRHQKNYSFVLDTDENDKEKLIDGILGTLKKSSKSRSISFQIHKENGGDDVSIKVLYCGVCHSDLHLLKNDWGVTDYPIVPGHEIVGVVTSVGNNVNKFKVGDQVGVGVIVGSCKSCQNCEQNLENYCPKLIYTYNGHSYDGAKTYGGYSDSIVVDQHFVLRFPDNLPLDAGAPLLCAGITIYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAINRLGADAFVVSSDPAQLKLNGKLVTVGLPNNPLELPVASIVFGRKMVGGSNFGGLKETQEMLDFCGKHNITAEIELIRMDDINTAIERLEKADVRYRFVIDIGNSFK 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3436313 3443403 + CmaCh02G005850.1 Cma02g00585 288336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00585 1311 MobiDBLite consensus disorder prediction 891 916 - -
Cma02g00585 1311 Gene3D - 1162 1220 - -
Cma02g00585 1311 CDD LOTUS 745 802 - -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 362 381 - -
Cma02g00585 1311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1136 1274 IPR036291 -
Cma02g00585 1311 Pfam Alcohol dehydrogenase GroES-like domain 1018 1130 IPR013154 -
Cma02g00585 1311 Gene3D - 50 199 - -
Cma02g00585 1311 ProSiteProfiles OST-type HTH domain profile. 744 820 IPR025605 -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 463 483 - -
Cma02g00585 1311 PANTHER LIMKAIN B LKAP 16 949 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cma02g00585 1311 Gene3D - 999 1161 - -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 484 505 - -
Cma02g00585 1311 ProSiteProfiles OST-type HTH domain profile. 261 333 IPR025605 -
Cma02g00585 1311 CDD CAD1 1016 1305 - -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 512 526 - -
Cma02g00585 1311 Pfam NYN domain 57 192 IPR021139 GO:0004540
Cma02g00585 1311 CDD LOTUS 262 330 - -
Cma02g00585 1311 CDD PIN_limkain_b1_N_like 57 181 - -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 844 916 - -
Cma02g00585 1311 SMART PKS_ER_names_mod 993 1304 IPR020843 GO:0016491
Cma02g00585 1311 MobiDBLite consensus disorder prediction 463 534 - -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 703 733 - -
Cma02g00585 1311 Gene3D - 263 332 IPR041966 -
Cma02g00585 1311 Gene3D - 747 808 IPR041966 -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 849 879 - -
Cma02g00585 1311 PANTHER EMB|CAB71880.1 16 949 - -
Cma02g00585 1311 Pfam OST-HTH/LOTUS domain 265 329 IPR025605 -
Cma02g00585 1311 Pfam OST-HTH/LOTUS domain 752 804 IPR025605 -
Cma02g00585 1311 MobiDBLite consensus disorder prediction 362 394 - -
Cma02g00585 1311 Gene3D - 1221 1275 - -
Cma02g00585 1311 SUPERFAMILY GroES-like 1014 1165 IPR011032 -
Cma02g00585 1311 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 1051 1065 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00585 Cma-Chr2:3436313 Cma20g01081 Cma-Chr20:8304259 2.61E-171 dispersed
Cma01g01986 Cma-Chr1:12775567 Cma02g00585 Cma-Chr2:3436313 9.41E-112 transposed
Cma03g00852 Cma-Chr3:6370865 Cma02g00585 Cma-Chr2:3436313 1.65E-124 transposed
Cma02g00585 Cma-Chr2:3436313 Cma20g01079 Cma-Chr20:8289789 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00585 - - cpep:111796232 1807.34