Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00592 ATGGGTTCTAAATCCCAAATCCTATTAAACCCACAAGCTTTGTTTGAAGATGAAGAACATGAACAAGCATCAACTCATCATCAAATGGAATTCTTCTCTTTCCCTTCAAACTTCAACGTTTCTCATCTTCCTTCAATCCCCCAACACCAAACCCTTTCTCCTTCCACTCCCTTTCTTCACCCTAGCCTCTCTCAAACCCTAAACTCCTCTCATTTTCCTACTCCAAACCTTCTTTCCTTGCAAACCTCCACTCCAAATCCATGGGCATTTGGGAAGAGAAATGAGTATCATTTGGGATTGGGAGTATCAACCATGAAGATGAAGAAGATGAAAGGAAGAAGAAAAGTGAGAGAGCCAAGATTCTCATTCAAGACCATGACCGATGTCGATGTTCTTGATGATGGTTACAAATGGCGCAAGTACGGTCAGAAAGTCGTCAAAAACACACATCATCCTAGAAGCTATTATCGTTGTACACAAGATGATTGTAGGGTTAAGAAACGAGTAGAGAGATTAGATGAAGATCCAAGAATGGTGATAACAACATATGAAGGACGACACATTCATTCTCCTTCCCATGATACTCAAGACTCCGAACCTCATACCCATCTCAACAATTTCTTTTGGTAA 630 40.63 MGSKSQILLNPQALFEDEEHEQASTHHQMEFFSFPSNFNVSHLPSIPQHQTLSPSTPFLHPSLSQTLNSSHFPTPNLLSLQTSTPNPWAFGKRNEYHLGLGVSTMKMKKMKGRRKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTHHPRSYYRCTQDDCRVKKRVERLDEDPRMVITTYEGRHIHSPSHDTQDSEPHTHLNNFFW 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3501164 3503758 - CmaCh02G005920.1 Cma02g00592 288343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00592 209 Pfam WRKY DNA -binding domain 133 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00592 209 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 23 202 - -
Cma02g00592 209 Gene3D WRKY domain 119 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00592 209 ProSiteProfiles WRKY domain profile. 127 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00592 209 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 202 IPR044810 GO:0003700
Cma02g00592 209 SUPERFAMILY WRKY DNA-binding domain 124 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00592 209 SMART WRKY_cls 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00592 Cma03g01052 CCT
Cma02g00592 Cma20g01105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00592 Cma-Chr2:3501164 Cma14g02165 Cma-Chr14:14852671 3.55E-47 dispersed
Cma02g00592 Cma-Chr2:3501164 Cma20g01105 Cma-Chr20:8639205 9.38E-91 wgd
Cma02g00592 Cma-Chr2:3501164 Cma03g01052 Cma-Chr3:7258119 8.51E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34453 PF03106 WRKY 1.80E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00592 - - cmo:103497483 275.404