Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00604 ATGGGTTCTTCAAGTGCTATCCCTCTCCTCACATTCCTGACTCTCCTCTACCTATTCTCCTTCTCATCCTCCGCCATCCATAGCCCAGTTCCGGCGGCGGATATCTGCCATTCCACAACTTCTCCATCCTTCTGCAAAGCCTTTCTCCCCAACTCCCTTGCCACCGTCCACTCCCATTGCCGCTTCACTCTCCGCCATGCCCTCGCCCATGCGCGCACCTTCCTTGCCCTCGTCGACACTCACCTCACCCTCTTCCCCTCCCTCGCTGCCCTCCATGACTGCCGCTCCCTCGCTGCGGCTAACCTCGACTTCCTATCCAACACCTTCCCCACAGTCAACACCACCACCACCACCACCACAAACGCCCTTCCCTTCTACAAAGCCGAAGAGATGGTGTCGTTGCTTAGCGCAGTCATCACCAATGAAAACACTTGCTACGAAGGGCTGATGAGCTCGGGCTCGGCCTCGGGCTTGGTTGATAAGGTGTTGAAGGCCATCTCGTTTGATACAAAGCTTTATAGTTTGTACCTTTCTTTGTTCAAAATGGGTTGGGTTTCTAATGATGTCAAGGCTCCTCATGTCCCAAAGATGAAGCATTTTGGGCGTGGAAAGGGTCAGTTGAAGCTCAATATGTCCCCCAAAAACCGTGCCTATTATGAGCGCTTGATGCATAGGAGCAAGCCACCGGCTAGGAGGCTTCTTCAGACCAATTCTAATGAAGATGATGGAATTTTGGTCAATGGTATCGTTGCGGTGGATCAGAATGGAACATATGACTTCACCACCATCAACGCCGCCATTCAGGCAGCTCCCAACAACTCCGTCGCCGCCGATGGATATTTCTTGATCATTGTCACTGCCGGAGTTTACAACGAGAGCGTGATGGTTCCCAAACACAAAAAGTATGTGTTGATGATTGGAGAAGGCAACAACCAAACCATCATCACCGGCAACAAAAACGTCGTTGATGGCTCTACCACGTTCAATAGCGGAACCTTTATTGTGGAGGGAACAGGCTTTTTCGGGGTGAACTTGACGATCACCAACACAGCCGGCCCCAACAAATTTCAAGCCGTGGCATTGCGAGTGAGTGCCGACATGACGACGTTCTACAGTTGCATATTCGAAGGGTATCAAGACACTCTTTACCCCCACTCTCTTCGACAATTCTATAGAGAGTGCGACATCTACGGAACTATAGACTTTATTTTGGGGGACGCGGCTGTGGTGTTCCAAAATTGCAACATTTATGCCCGCCTCCCAATGAAAGGTCAATACATTGTCATAACGGCACAAGGCCGAACTGATCGAAATCAAAACACCGGAATCTCCATCCACAACTGCACTATCAAGCCCACTGCGCAGCTCGCAGCCAGCCCCACCATCAAGAGCTACTTCGGGAGGCCGTGGAAGGAGTACGCTCGAACAGTTTACATGCAGTCGTTTATCGATGCGTTTATCGACCCAGAAGGGTGGAATGTGTGGGACGGGACTTTGAATTTGAACACGTCATATTATGCTGAGTTTAATAACTCTGGGCCGGGATCTGACACTTCACGGCGGGCTAAATGGGCTGTCGGTTTGATCAACGCCACCGTGGCTAATAACTTCACGGTGTCTCCCTTCTTGGGTGGCGATCAATGGCTACCGCCGACCACCGTGCCGTACACTGGTGGTTTGATATCATAA 1689 51.1 MGSSSAIPLLTFLTLLYLFSFSSSAIHSPVPAADICHSTTSPSFCKAFLPNSLATVHSHCRFTLRHALAHARTFLALVDTHLTLFPSLAALHDCRSLAAANLDFLSNTFPTVNTTTTTTTNALPFYKAEEMVSLLSAVITNENTCYEGLMSSGSASGLVDKVLKAISFDTKLYSLYLSLFKMGWVSNDVKAPHVPKMKHFGRGKGQLKLNMSPKNRAYYERLMHRSKPPARRLLQTNSNEDDGILVNGIVAVDQNGTYDFTTINAAIQAAPNNSVAADGYFLIIVTAGVYNESVMVPKHKKYVLMIGEGNNQTIITGNKNVVDGSTTFNSGTFIVEGTGFFGVNLTITNTAGPNKFQAVALRVSADMTTFYSCIFEGYQDTLYPHSLRQFYRECDIYGTIDFILGDAAVVFQNCNIYARLPMKGQYIVITAQGRTDRNQNTGISIHNCTIKPTAQLAASPTIKSYFGRPWKEYARTVYMQSFIDAFIDPEGWNVWDGTLNLNTSYYAEFNNSGPGSDTSRRAKWAVGLINATVANNFTVSPFLGGDQWLPPTTVPYTGGLIS 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3612270 3614692 - CmaCh02G006040.1 Cma02g00604 288355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00604 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 182 IPR035513 -
Cma02g00604 562 CDD PMEI-like_3 35 184 - -
Cma02g00604 562 PANTHER PECTINESTERASE 15 560 - -
Cma02g00604 562 Pfam Plant invertase/pectin methylesterase inhibitor 34 152 IPR006501 GO:0004857
Cma02g00604 562 Gene3D - 246 560 IPR012334 -
Cma02g00604 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 182 IPR035513 -
Cma02g00604 562 Pfam Pectinesterase 250 546 IPR000070 GO:0030599|GO:0042545
Cma02g00604 562 SMART PMEI_2 26 179 IPR006501 GO:0004857
Cma02g00604 562 PANTHER PECTINESTERASE 15 560 - -
Cma02g00604 562 SUPERFAMILY Pectin lyase-like 246 559 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00604 Cma-Chr2:3612270 Cma08g00442 Cma-Chr8:2494265 0 dispersed
Cma02g00604 Cma-Chr2:3612270 Cma20g01115 Cma-Chr20:8798768 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00604 K01051 - csv:101216984 829.32