Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00615 ATGGCCGATGCTGAGGATATCCAGCCACTTGTCTGCGACAATGGAACTGGAATGGTGAAGGCCGGATTTGCTGGTGATGATGCTCCTAGGGCAGTGTTTCCCAGCATTGTTGGTCGACCCCGACACACTGGTGTCATGGTAGGTATGGGCCAGAAGGATGCTTATGTCGGTGATGAGGCCCAATCCAAAAGAGGTATTCTCACCTTGAAATATCCCATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCTGTGCTTCTTACTGAAGCACCTCTCAATCCCAAAGCTAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCTATGTATGTTGCTATCCAGGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTGGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTACGAGGGTTATGCTCTACCCCATGCTATCCTTCGTCTGGACCTTGCTGGTCGTGATCTAACTGATGCCTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACTACCACTGCTGAACGGGAAATTGTCCGTGACATGAAAGAAAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTTGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAAAACTATGAACTGCCTGATGGGCAAGTCATCACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTTTTCCAGCCATCTCTCATTGGAATGGAAGCTGCTGGAATCCATGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGTAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCAGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCAAGCAGCATGAAAATTAAGGTCGTTGCACCTCCTGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGTGAGTATGATGAATCTGGCCCATCCATCGTCCACCGGAAGTGCTTCTAA 1134 46.65 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3705529 3708002 - CmaCh02G006150.1 Cma02g00615 288366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00615 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cma02g00615 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cma02g00615 377 Gene3D - 10 371 - -
Cma02g00615 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma02g00615 377 PRINTS Actin signature 28 37 IPR004000 -
Cma02g00615 377 PRINTS Actin signature 51 62 IPR004000 -
Cma02g00615 377 PRINTS Actin signature 63 85 IPR004000 -
Cma02g00615 377 PRINTS Actin signature 117 130 IPR004000 -
Cma02g00615 377 PRINTS Actin signature 142 161 IPR004000 -
Cma02g00615 377 PRINTS Actin signature 238 254 IPR004000 -
Cma02g00615 377 Gene3D - 140 340 - -
Cma02g00615 377 PANTHER ACTIN 1 376 IPR004000 -
Cma02g00615 377 SMART actin_3 7 377 IPR004000 -
Cma02g00615 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma02g00615 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma02g00615 377 PANTHER ACTIN 1 376 - -
Cma02g00615 377 Pfam Actin 5 377 IPR004000 -
Cma02g00615 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma02g00615 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00615 Cma-Chr2:3705529 Cma03g01077 Cma-Chr3:7386277 0 dispersed
Cma04g01794 Cma-Chr4:9058593 Cma02g00615 Cma-Chr2:3705529 1.29E-71 dispersed
Cma04g02982 Cma-Chr4:19548863 Cma02g00615 Cma-Chr2:3705529 6.48E-122 dispersed
Cma06g00663 Cma-Chr6:3289483 Cma02g00615 Cma-Chr2:3705529 5.47E-41 dispersed
Cma15g00068 Cma-Chr15:336510 Cma02g00615 Cma-Chr2:3705529 2.33E-111 dispersed
Cma16g00948 Cma-Chr16:7318591 Cma02g00615 Cma-Chr2:3705529 4.63E-39 dispersed
Cma19g00282 Cma-Chr19:2115699 Cma02g00615 Cma-Chr2:3705529 0 dispersed
Cma20g00406 Cma-Chr20:1944722 Cma02g00615 Cma-Chr2:3705529 0 dispersed
Cma02g00615 Cma-Chr2:3705529 Cma20g01073 Cma-Chr20:8126203 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00615 K10355 - csv:101215469 758.059