Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00628 ATGGATGAGAATTCCTTAACCTCTAATAGCACAGAGGATAAAATCATCTGCTATGCGCCAAGAATGATCACAACAAATGGGGTGTGGCAAGGCGACAACCCTTTGGAGTATTCTCTCCCTCTCTTTATCCTGCAGTTAACAATGGTGGTTATGATGACTCGCACTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCAGTACTGGGGAGGAGTGATCAATTTTCCAACGCCTTATTTCCTTTAAGAAGTGTTATGGTGCTTGAAGCAATGGCAAACGTGGGGCTTCTCTACTTTCTGTTCTTGATTGGTGTGGAGATGGAACTCTCAGTGATTCGTCGATCTGGTAGGAAGGCAATGGCAATAGCTGCAGCAGGAATGATTCTTCCATTCGGAATAGGAGCTGTTTTTTCATTCCAGCTGCACAAAGTAGATCAGAAATTGAACTACAGCACTTATATCATGTTTCTTGGTATTGCACTTTCTGTGACTGCTTTCCCAGTGCTTGCTAGAATTCTCGCAGAGCTTAAATTGATAAACTCAGAGCTTGGAAGGATGGCAATGGCTTCTGCCCTTTTCAATGATATGTGCGCTTGGGTTCTCTTAGCTTTAGCCCTAGCCTTGTCTGAGAACGATTCCTCATCTTTGGCTTCTCTATGGGTTGTACTGTCAAGTACAGGCTTTGTCTTGTTTTGTATCTTCATAATTAGACCGATTGTCGCATGGATGATTCGAAAAACCCCAGAAGGAGAAAGTGTGAGTGAGTTCAGTATTTGTTTGATCCTCACAGGGGTTATTATCTCAGGGTTTATTACAGATGCCATAGGAACACACTCGGTCTTTGGAGCTTTTGTGTTTGGGTTGGTCATCCCAAATGGATCACTTGGAGTGGCTTTGATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTCTTCTTTGCAATAAGTGGGCTCAAGACTAATGTGAGAAGCATAGATGGATTAATGACTTGGGTATCTATTCTGTTCATCACTGTCCTTGCTTTCATTGGCAAGGTCATTGGAACTCTCCTTGCCTCCGTTTGTTATCAGATGTCCTATCGCGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAAGGCCTTGTTGAAATGATCATCCTCAACGTCGGAAAGGACCAACAGATATTAGATGATCAAACATTCACAGTAATGGTGATTGTAGCCCTCATTATGACAGGGATAATAACACCTGTAGTTACCATACTCTATAGGCCAACAAGAAGGCTTCTGCCGTATAAGAAACGAACAATCCAAGCTTCAAAGCCAGATTCGGAGTTCAGAGTGTTGGTTTGCATCCACACACCTCGAAATGTGCCGACAATCATCAACCTCCTGGATGCTTCCAACCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGCCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCGTAAATCGAACCCAAGCTCATTCAGAACATATCATCAGTGCATTCGAGAACTATGAACAACACATCGATTGCGTCTCTGTTCAGCCTCTAACAGCTATTTCCCCTTACTCCACAATGCACGAAGACATCTGCTATTTAGCCGAGGACAAACGCGTCGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTCGATGGAGGAATGGAATCCACAAATCCAGCACTAAGATTGGTTAACCAAAATGTGTTAGTCAATGCCCCTTGCTCCGTCGGAATCCTAGTCGATCGAGGCCTAAGTGGCTCGAATCAAAGCGGATCGAACAAGGCGTCTCATTACAACATAATCGTGTTGTTCTTCGGTGGACAAGACGACAGAGAAGCTCTAGCATACGCATGGAGAATGTCAGAAAATCCAAGAGTGACCTTAACCGTAATGCGATTCATCGCCGCAGAACAAGTAATAGAAGCAAAACAAGAAGCAGATGCACAAGGAGTTTCAGCAATGCAAACAGATATGGTCAATGAAAGGCAGGTGGATGAAGAATACATAAATGAATTCATGACAAATAATGAAGAAAACAATTCAATTACATACACAGAGAGAATCTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGGTGCTCACGACCTGTTCATCGTTGGCAGAGGAGAAGCTCAAGCATCGCCACTCATCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGCAATCGGCGATTTGCTAGCTTCGTCCGATTTAGCAGCGACGGCTTCAGTTTTGGTAGTGGAACAGTTCGGAGTAGCAATGGTGGCGGAGCATGGAGAAGAAGGAAGGTCACCGCATCGCCACGATCAAGGTGACTACTACCAAAACTTGAGATCCACGAATGCGAGGCAACATACTCCATCAAGATCTCATATTATATACAATGGATAG 2511 44.6 MDENSLTSNSTEDKIICYAPRMITTNGVWQGDNPLEYSLPLFILQLTMVVMMTRTLVFLLKPFRQPRVISEILGGVILGPSVLGRSDQFSNALFPLRSVMVLEAMANVGLLYFLFLIGVEMELSVIRRSGRKAMAIAAAGMILPFGIGAVFSFQLHKVDQKLNYSTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALALALSENDSSSLASLWVVLSSTGFVLFCIFIIRPIVAWMIRKTPEGESVSEFSICLILTGVIISGFITDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVRSIDGLMTWVSILFITVLAFIGKVIGTLLASVCYQMSYREGVTLGLLMNTKGLVEMIILNVGKDQQILDDQTFTVMVIVALIMTGIITPVVTILYRPTRRLLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPAVNRTQAHSEHIISAFENYEQHIDCVSVQPLTAISPYSTMHEDICYLAEDKRVAFIIIPFHKQQTVDGGMESTNPALRLVNQNVLVNAPCSVGILVDRGLSGSNQSGSNKASHYNIIVLFFGGQDDREALAYAWRMSENPRVTLTVMRFIAAEQVIEAKQEADAQGVSAMQTDMVNERQVDEEYINEFMTNNEENNSITYTERILNNGEETVAAIRSMDGAHDLFIVGRGEAQASPLIAGLTDWSECPELGAIGDLLASSDLAATASVLVVEQFGVAMVAEHGEEGRSPHRHDQGDYYQNLRSTNARQHTPSRSHIIYNG 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3792971 3795812 - CmaCh02G006280.1 Cma02g00628 288379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00628 836 Gene3D - 41 440 IPR038770 -
Cma02g00628 836 PANTHER BNAA09G08340D PROTEIN 12 803 - -
Cma02g00628 836 MobiDBLite consensus disorder prediction 814 836 - -
Cma02g00628 836 PANTHER CATION/H + ANTIPORTER 12 803 - -
Cma02g00628 836 MobiDBLite consensus disorder prediction 799 813 - -
Cma02g00628 836 MobiDBLite consensus disorder prediction 799 836 - -
Cma02g00628 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00704 Cma-Chr1:3691418 Cma02g00628 Cma-Chr2:3792971 2.08E-155 dispersed
Cma02g00628 Cma-Chr2:3792971 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma04g01087 Cma-Chr4:5598004 Cma02g00628 Cma-Chr2:3792971 1.51E-162 dispersed
Cma08g00518 Cma-Chr8:2995216 Cma02g00628 Cma-Chr2:3792971 1.28E-102 dispersed
Cma11g01521 Cma-Chr11:9947057 Cma02g00628 Cma-Chr2:3792971 9.65E-160 dispersed
Cma13g00030 Cma-Chr13:377342 Cma02g00628 Cma-Chr2:3792971 1.08E-160 dispersed
Cma14g00732 Cma-Chr14:3673692 Cma02g00628 Cma-Chr2:3792971 4.01E-166 dispersed
Cma17g00962 Cma-Chr17:7144723 Cma02g00628 Cma-Chr2:3792971 2.44E-96 dispersed
Cma19g00370 Cma-Chr19:4185758 Cma02g00628 Cma-Chr2:3792971 2.90E-107 dispersed
Cma02g00628 Cma-Chr2:3792971 Cma16g00567 Cma-Chr16:2919666 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00628 - - csv:101219265 1370.91