Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00628 ATGGATGAGAATTCCTTAACCTCTAATAGCACAGAGGATAAAATCATCTGCTATGCGCCAAGAATGATCACAACAAATGGGGTGTGGCAAGGCGACAACCCTTTGGAGTATTCTCTCCCTCTCTTTATCCTGCAGTTAACAATGGTGGTTATGATGACTCGCACTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCAGTACTGGGGAGGAGTGATCAATTTTCCAACGCCTTATTTCCTTTAAGAAGTGTTATGGTGCTTGAAGCAATGGCAAACGTGGGGCTTCTCTACTTTCTGTTCTTGATTGGTGTGGAGATGGAACTCTCAGTGATTCGTCGATCTGGTAGGAAGGCAATGGCAATAGCTGCAGCAGGAATGATTCTTCCATTCGGAATAGGAGCTGTTTTTTCATTCCAGCTGCACAAAGTAGATCAGAAATTGAACTACAGCACTTATATCATGTTTCTTGGTATTGCACTTTCTGTGACTGCTTTCCCAGTGCTTGCTAGAATTCTCGCAGAGCTTAAATTGATAAACTCAGAGCTTGGAAGGATGGCAATGGCTTCTGCCCTTTTCAATGATATGTGCGCTTGGGTTCTCTTAGCTTTAGCCCTAGCCTTGTCTGAGAACGATTCCTCATCTTTGGCTTCTCTATGGGTTGTACTGTCAAGTACAGGCTTTGTCTTGTTTTGTATCTTCATAATTAGACCGATTGTCGCATGGATGATTCGAAAAACCCCAGAAGGAGAAAGTGTGAGTGAGTTCAGTATTTGTTTGATCCTCACAGGGGTTATTATCTCAGGGTTTATTACAGATGCCATAGGAACACACTCGGTCTTTGGAGCTTTTGTGTTTGGGTTGGTCATCCCAAATGGATCACTTGGAGTGGCTTTGATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTCTTCTTTGCAATAAGTGGGCTCAAGACTAATGTGAGAAGCATAGATGGATTAATGACTTGGGTATCTATTCTGTTCATCACTGTCCTTGCTTTCATTGGCAAGGTCATTGGAACTCTCCTTGCCTCCGTTTGTTATCAGATGTCCTATCGCGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAAGGCCTTGTTGAAATGATCATCCTCAACGTCGGAAAGGACCAACAGATATTAGATGATCAAACATTCACAGTAATGGTGATTGTAGCCCTCATTATGACAGGGATAATAACACCTGTAGTTACCATACTCTATAGGCCAACAAGAAGGCTTCTGCCGTATAAGAAACGAACAATCCAAGCTTCAAAGCCAGATTCGGAGTTCAGAGTGTTGGTTTGCATCCACACACCTCGAAATGTGCCGACAATCATCAACCTCCTGGATGCTTCCAACCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGCCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCGTAAATCGAACCCAAGCTCATTCAGAACATATCATCAGTGCATTCGAGAACTATGAACAACACATCGATTGCGTCTCTGTTCAGCCTCTAACAGCTATTTCCCCTTACTCCACAATGCACGAAGACATCTGCTATTTAGCCGAGGACAAACGCGTCGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTCGATGGAGGAATGGAATCCACAAATCCAGCACTAAGATTGGTTAACCAAAATGTGTTAGTCAATGCCCCTTGCTCCGTCGGAATCCTAGTCGATCGAGGCCTAAGTGGCTCGAATCAAAGCGGATCGAACAAGGCGTCTCATTACAACATAATCGTGTTGTTCTTCGGTGGACAAGACGACAGAGAAGCTCTAGCATACGCATGGAGAATGTCAGAAAATCCAAGAGTGACCTTAACCGTAATGCGATTCATCGCCGCAGAACAAGTAATAGAAGCAAAACAAGAAGCAGATGCACAAGGAGTTTCAGCAATGCAAACAGATATGGTCAATGAAAGGCAGGTGGATGAAGAATACATAAATGAATTCATGACAAATAATGAAGAAAACAATTCAATTACATACACAGAGAGAATCTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGGTGCTCACGACCTGTTCATCGTTGGCAGAGGAGAAGCTCAAGCATCGCCACTCATCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGCAATCGGCGATTTGCTAGCTTCGTCCGATTTAGCAGCGACGGCTTCAGTTTTGGTAGTGGAACAGTTCGGAGTAGCAATGGTGGCGGAGCATGGAGAAGAAGGAAGGTCACCGCATCGCCACGATCAAGGTGACTACTACCAAAACTTGAGATCCACGAATGCGAGGCAACATACTCCATCAAGATCTCATATTATATACAATGGATAG 2511 44.6 MDENSLTSNSTEDKIICYAPRMITTNGVWQGDNPLEYSLPLFILQLTMVVMMTRTLVFLLKPFRQPRVISEILGGVILGPSVLGRSDQFSNALFPLRSVMVLEAMANVGLLYFLFLIGVEMELSVIRRSGRKAMAIAAAGMILPFGIGAVFSFQLHKVDQKLNYSTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALALALSENDSSSLASLWVVLSSTGFVLFCIFIIRPIVAWMIRKTPEGESVSEFSICLILTGVIISGFITDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVRSIDGLMTWVSILFITVLAFIGKVIGTLLASVCYQMSYREGVTLGLLMNTKGLVEMIILNVGKDQQILDDQTFTVMVIVALIMTGIITPVVTILYRPTRRLLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPAVNRTQAHSEHIISAFENYEQHIDCVSVQPLTAISPYSTMHEDICYLAEDKRVAFIIIPFHKQQTVDGGMESTNPALRLVNQNVLVNAPCSVGILVDRGLSGSNQSGSNKASHYNIIVLFFGGQDDREALAYAWRMSENPRVTLTVMRFIAAEQVIEAKQEADAQGVSAMQTDMVNERQVDEEYINEFMTNNEENNSITYTERILNNGEETVAAIRSMDGAHDLFIVGRGEAQASPLIAGLTDWSECPELGAIGDLLASSDLAATASVLVVEQFGVAMVAEHGEEGRSPHRHDQGDYYQNLRSTNARQHTPSRSHIIYNG 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3792971 3795812 - CmaCh02G006280.1 Cma02g00628 288379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00628 836 Gene3D - 41 440 IPR038770 -
Cma02g00628 836 PANTHER BNAA09G08340D PROTEIN 12 803 - -
Cma02g00628 836 MobiDBLite consensus disorder prediction 814 836 - -
Cma02g00628 836 PANTHER CATION/H + ANTIPORTER 12 803 - -
Cma02g00628 836 MobiDBLite consensus disorder prediction 799 813 - -
Cma02g00628 836 MobiDBLite consensus disorder prediction 799 836 - -
Cma02g00628 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00628 - - - csv:101219265 1370.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00704 Cma-Chr1:3691418 Cma02g00628 Cma-Chr2:3792971 2.08E-155 dispersed
Cma02g00628 Cma-Chr2:3792971 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma04g01087 Cma-Chr4:5598004 Cma02g00628 Cma-Chr2:3792971 1.51E-162 dispersed
Cma08g00518 Cma-Chr8:2995216 Cma02g00628 Cma-Chr2:3792971 1.28E-102 dispersed
Cma11g01521 Cma-Chr11:9947057 Cma02g00628 Cma-Chr2:3792971 9.65E-160 dispersed
Cma13g00030 Cma-Chr13:377342 Cma02g00628 Cma-Chr2:3792971 1.08E-160 dispersed
Cma14g00732 Cma-Chr14:3673692 Cma02g00628 Cma-Chr2:3792971 4.01E-166 dispersed
Cma17g00962 Cma-Chr17:7144723 Cma02g00628 Cma-Chr2:3792971 2.44E-96 dispersed
Cma19g00370 Cma-Chr19:4185758 Cma02g00628 Cma-Chr2:3792971 2.90E-107 dispersed
Cma02g00628 Cma-Chr2:3792971 Cma16g00567 Cma-Chr16:2919666 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00628 . 10 790 Antiporter Super Family AT2G13620 71.0 0.0e+00 1107.0
Cma20g01053 . 10 729 Antiporter Super Family AT2G13620 63.9 8.1e-273 937.2
Cma03g00436 . 75 843 Antiporter Super Family AT3G53720 67.0 1.9e-279 959.1
Cma07g00971 . 75 821 Antiporter Super Family AT3G53720 64.0 3.2e-263 905.2
Cma16g00569 . 1 797 Antiporter Super Family AT5G41610 68.9 5.9e-308 1053.9
Cma16g00568 . 1 770 Antiporter Super Family AT5G41610 67.7 1.4e-293 1006.1
Cma16g00567 . 1 750 Antiporter Super Family AT5G41610 63.8 1.6e-276 949.5
Cma04g00715 . 7 750 Antiporter Super Family AT5G41610 63.1 6.8e-272 934.1
Cma03g00436 . 8 818 Antiporter Super Family AT5G41610 51.5 4.3e-210 728.8
Cma07g00971 . 8 804 Antiporter Super Family AT5G41610 50.3 2.5e-205 713.0
Cma16g00568 . 1 769 Antiporter Super Family AT4G23700 66.1 1.1e-288 989.9
Cma16g00569 . 1 779 Antiporter Super Family AT4G23700 63.5 7.1e-277 950.7
Cma16g00567 . 11 769 Antiporter Super Family AT4G23700 61.3 9.3e-269 923.7
Cma04g00715 . 17 748 Antiporter Super Family AT4G23700 59.5 3.1e-256 882.1
Cma16g00569 . 5 779 Antiporter Super Family AT3G17630 64.6 2.3e-272 935.6
Cma16g00568 . 4 769 Antiporter Super Family AT3G17630 63.5 4.3e-271 931.4
Cma16g00567 . 4 769 Antiporter Super Family AT3G17630 59.9 7.4e-255 877.5
Cma04g00715 . 9 748 Antiporter Super Family AT3G17630 57.7 1.5e-239 826.6
Cma03g00436 . 2 808 Antiporter Super Family AT3G17630 51.6 8.3e-206 714.5
Cma07g00971 . 8 805 Antiporter Super Family AT3G17630 50.7 1.5e-199 693.7
Cma16g00568 . 11 769 Antiporter Super Family AT1G64170 58.5 8.4e-238 820.8
Cma16g00569 . 10 789 Antiporter Super Family AT1G64170 56.4 4.4e-231 798.5
Cma16g00567 . 15 750 Antiporter Super Family AT1G64170 55.9 4.9e-222 768.5
Cma04g00715 . 11 750 Antiporter Super Family AT1G64170 52.8 4.9e-214 741.9
Cma02g00628 . 10 790 Antiporter Super Family AT2G13620 71.0 0.0e+00 1107.0
Cma20g01053 . 10 729 Antiporter Super Family AT2G13620 63.9 8.1e-273 937.2
Cma16g00568 . 11 769 Antiporter Super Family AT1G64170 58.5 8.4e-238 820.8
Cma16g00569 . 10 789 Antiporter Super Family AT1G64170 56.4 4.4e-231 798.5
Cma16g00567 . 15 750 Antiporter Super Family AT1G64170 55.9 4.9e-222 768.5
Cma04g00715 . 11 750 Antiporter Super Family AT1G64170 52.8 4.9e-214 741.9
Cma16g00568 . 1 769 Antiporter Super Family AT4G23700 66.1 1.1e-288 989.9
Cma16g00569 . 1 779 Antiporter Super Family AT4G23700 63.5 7.1e-277 950.7
Cma16g00567 . 11 769 Antiporter Super Family AT4G23700 61.3 9.3e-269 923.7
Cma04g00715 . 17 748 Antiporter Super Family AT4G23700 59.5 3.1e-256 882.1
Cma16g00569 . 1 797 Antiporter Super Family AT5G41610 68.9 5.9e-308 1053.9
Cma16g00568 . 1 770 Antiporter Super Family AT5G41610 67.7 1.4e-293 1006.1
Cma16g00567 . 1 750 Antiporter Super Family AT5G41610 63.8 1.6e-276 949.5
Cma04g00715 . 7 750 Antiporter Super Family AT5G41610 63.1 6.8e-272 934.1
Cma03g00436 . 8 818 Antiporter Super Family AT5G41610 51.5 4.3e-210 728.8
Cma07g00971 . 8 804 Antiporter Super Family AT5G41610 50.3 2.5e-205 713.0
Cma16g00569 . 5 779 Antiporter Super Family AT3G17630 64.6 2.3e-272 935.6
Cma16g00568 . 4 769 Antiporter Super Family AT3G17630 63.5 4.3e-271 931.4
Cma16g00567 . 4 769 Antiporter Super Family AT3G17630 59.9 7.4e-255 877.5
Cma04g00715 . 9 748 Antiporter Super Family AT3G17630 57.7 1.5e-239 826.6
Cma03g00436 . 2 808 Antiporter Super Family AT3G17630 51.6 8.3e-206 714.5
Cma07g00971 . 8 805 Antiporter Super Family AT3G17630 50.7 1.5e-199 693.7
Cma03g00436 . 75 843 Antiporter Super Family AT3G53720 67.0 1.9e-279 959.1
Cma07g00971 . 75 821 Antiporter Super Family AT3G53720 64.0 3.2e-263 905.2
Cma17g00962 . 47 790 Antiporter Super Family AT3G52080 54.0 4.0e-232 802.0
Cma08g00518 . 90 833 Antiporter Super Family AT3G52080 54.1 7.0e-229 791.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00628 Cma_Chr02 FPKM 0.0 0.179297 0.0 0.0 0.0 0.0 0.0 1.050228 0.971308 0.983196