Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00641 ATGGCGGCGGGTGAAGGATGTCCATTGAAGCTCTACTCCTACTACCTCAGTACTTGTGCTCAACGTGTTCGAATAGCTCTTAACTTAAAAGGGATAAGGTTTGAGTACAAAGCTGTTGATCTTATGAAGGGAGAGCATTTGAATCCTGACTTTCTAAAGCTCAACCCTGTTGGGTTTGTACCTGCTCTCGTGGATGGCGATATCGTTGTTGCCGACTCTTTTGCTATAATAATGTATTTAGAGGAGAAGTACCCTCACCATCCTCTGTTGCCGAGTGATCTTTATAAAAGAGCTATCAATTACCAGGCTGCAAATATTGTTTCTTCAAGCATACAACCTCTTCAAAACCTAATTGTTGAGAATTACATTGAGGAAAAATGTGGTGTAGAGGACAAACTCTCTTGGGTTCATATGATCATTGGAAAAGGTTTTTTAGCACTTGAGAAGTTACTAAAAGATCATGCTGGAAAATTTGCCACTGGAGATGAAATTTACCTGGCGGACTTTATTTTTGGCACCTCAACTCTACCGCGCGCCATTGAGACATTCAATGTTGACATGTCCAAGTTTCCACTTCTGTCAAGATTGTATGAGGAATACAAGGAGGTACCAGCATTTGAAGATGCAGCACCAGAGAAGCAGCCTGATGCTCCTTCTCAAACCTCTGCCTAA 672 41.82 MAAGEGCPLKLYSYYLSTCAQRVRIALNLKGIRFEYKAVDLMKGEHLNPDFLKLNPVGFVPALVDGDIVVADSFAIIMYLEEKYPHHPLLPSDLYKRAINYQAANIVSSSIQPLQNLIVENYIEEKCGVEDKLSWVHMIIGKGFLALEKLLKDHAGKFATGDEIYLADFIFGTSTLPRAIETFNVDMSKFPLLSRLYEEYKEVPAFEDAAPEKQPDAPSQTSA 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3887013 3892301 + CmaCh02G006410.1 Cma02g00641 288392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00641 223 Gene3D - 92 220 - -
Cma02g00641 223 TIGRFAM maiA: maleylacetoacetate isomerase 10 217 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cma02g00641 223 SFLD Main (cytGST) 9 200 - -
Cma02g00641 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 7 88 IPR004045 -
Cma02g00641 223 PANTHER MALEYLACETOACETATE ISOMERASE 9 219 - -
Cma02g00641 223 CDD GST_N_Zeta 9 81 IPR034333 -
Cma02g00641 223 SUPERFAMILY Thioredoxin-like 8 91 IPR036249 -
Cma02g00641 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 219 IPR010987 -
Cma02g00641 223 Pfam Glutathione S-transferase, N-terminal domain 11 86 IPR004045 -
Cma02g00641 223 SFLD Glutathione Transferase (cytosolic) 9 200 IPR040079 -
Cma02g00641 223 SUPERFAMILY GST C-terminal domain-like 88 218 IPR036282 -
Cma02g00641 223 CDD GST_C_Zeta 94 214 IPR034330 -
Cma02g00641 223 Gene3D Glutaredoxin 8 91 - -
Cma02g00641 223 PANTHER S-CRYSTALLIN-RELATED 9 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00641 Cma-Chr2:3887013 Cma06g01135 Cma-Chr6:7652425 1.32E-79 dispersed
Cma16g00590 Cma-Chr16:3054792 Cma02g00641 Cma-Chr2:3887013 6.59E-12 dispersed
Cma02g00641 Cma-Chr2:3887013 Cma02g00643 Cma-Chr2:3895323 3.15E-112 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00641 K01800 - csv:116401624 351.288