Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00667 ATGACTATGACCGTCGCTACAAGAGCAATCGCAACGGCTCGATCAGCGGTGCGAGCGAGCAGGCTCCGCAATGTGTTTACTGCGCAGAAATCTCAGTCTCACGCTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATGCGCTCCGAGGAGCAGAGCATCGCCGCTCGTCTTCGTAGTTCTGGATTGTTCCGAAGCCAAGGCCTCATTGGCGGCCAGTGGATTGATGCTTACGATGGGAGGACCATTAAGGTTCATAATCCAGCAAATGGTGAAGTTATAGCCAATGTCCCTCTCATGAGCAAAAGGGAGACAGATGATGCTATTACTTCAGCTTATGATGCTTTCAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGTAAATGGTACCAGCTTCTAACTACCCACAAAGAACAGATTGGACAGTTGATAACCTTAGAGCAAGGCAAACCATTAAAGGAATCAGTGGGTGAGATAAACTACGGAGCCAGCTTCCTTGAGTTCTTTTCCGAGGAAGCCAAACGAGTGTACGGTGACATAATCTCACCAACTATAGCTGATCGTCGACTTTTTGTGTTGAAACAGCCTGTTGGAGTTGTTGGTGTTATTACTCCTTGGAACTTCCCGTTGGCTATGATTACACGGAAGGTTGCACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACTCCCTTGACGGCTTTAGCAGCAGCTGAGCTCTCACTGCAAGCTGGAATTCCTCCGGGTGTAGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTACACAGGTTAGAAAAATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAATTGATGGCTGGAGCTGCTGGGACTGTTAAAAGGGTGTCCTTGGAACTTGGGGGCAATGCACCTCACATAGTCTTTGATGATGCAGATGTGGATGTTGCAGTAAAAGGAGTTATTGCATCGAAGTTTCGGAACAGTGGACAGACTTGTGTTTCTGCCAATAGGATTCTTGTTCAACAAGGCATATATGAGAAATTTTGTAATGCTTTCTCAAAAGCTGCGCAAGATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTGATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCGAGATGCCATCACGAAGGGAGCAAAAGTTGTTCTAGGCGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAACCTACCGTCATTGCTGACGTGAATAGTGATATGCTTTTATTCAGGGAGGAAGTATTCGGTCCGGTGGCACCCTTACTGCCATTCAGAACAGAGGAGGAAGCAATTGGTCTGGCTAATGACGCCAATGCAGGATTAGCTGCATGCGTATACACAAATAATATTCAACGTTCATGGAGAATGGCTGAAGCTCTTGAATATGGAATGGTTGGTGTTAATGAAAGCCTAATTGCTACAGAGGTGGCTCCATTTGGTGGCATTAAACAGTCGGGCCTTGGTCGGGAAGGATCCAAATATGGGATGGACGATTATCTTGAGCTGAAATACGTTTGTTTGGGGAATATGGACGGCAACTGA 1629 46.65 MTMTVATRAIATARSAVRASRLRNVFTAQKSQSHALLIRQMSSEAQSMRSEEQSIAARLRSSGLFRSQGLIGGQWIDAYDGRTIKVHNPANGEVIANVPLMSKRETDDAITSAYDAFKSWSKLTAADRSNRLRKWYQLLTTHKEQIGQLITLEQGKPLKESVGEINYGASFLEFFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVITPWNFPLAMITRKVAPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASTQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPHIVFDDADVDVAVKGVIASKFRNSGQTCVSANRILVQQGIYEKFCNAFSKAAQDLQVGDGFGEGVAQGPLINEAAVQKVEKFLRDAITKGAKVVLGGKRHSLGMTFFEPTVIADVNSDMLLFREEVFGPVAPLLPFRTEEEAIGLANDANAGLAACVYTNNIQRSWRMAEALEYGMVGVNESLIATEVAPFGGIKQSGLGREGSKYGMDDYLELKYVCLGNMDGN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4051800 4059869 + CmaCh02G006670.1 Cma02g00667 288418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00667 542 SUPERFAMILY ALDH-like 64 539 IPR016161 GO:0016491
Cma02g00667 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 310 317 IPR029510 GO:0016491
Cma02g00667 542 Pfam Aldehyde dehydrogenase family 75 534 IPR015590 GO:0016491
Cma02g00667 542 CDD ALDH_F5_SSADH_GabD 86 536 - -
Cma02g00667 542 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 62 539 - -
Cma02g00667 542 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 62 539 - -
Cma02g00667 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 314 503 IPR016163 GO:0016620
Cma02g00667 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 81 528 IPR016162 GO:0016491
Cma02g00667 542 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 86 532 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00667 Cma-Chr2:4051800 Cma10g00604 Cma-Chr10:2795115 5.40E-111 dispersed
Cma12g01154 Cma-Chr12:9099711 Cma02g00667 Cma-Chr2:4051800 2.39E-59 transposed
Cma17g00680 Cma-Chr17:5695590 Cma02g00667 Cma-Chr2:4051800 2.08E-58 transposed
Cma02g00667 Cma-Chr2:4051800 Cma20g00289 Cma-Chr20:1399262 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00667 K17761 - csv:101217352 871.692