Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00669 | ATGTTTCATGCCACCAAGAAACCCTCCTCTATGACATCTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCGGGTCTCGTCCTCACTACCGACCCCAAGCCCCGTCTCCGCTGGACGGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCTGACAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGTGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAGTTCAGGCTCGGGAAGCAACCGCACAAGGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCAGCCTTAGAACTTCATAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAATGCAATTGGAGGTCCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACATCTTCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCACTGCCGTCGGCGCCGGACGTTTCAAAACCACTTCCAACAATATTGGAACAACCACCAATCTTGTTTCAGACGCCGCCAACAAAGCCTTCATTTCACCTCCTCCTCACACCTTCCATCCTTTTCAAGACATCAACGACCTATTTACCTCGGAACCACCGGCGCCTGCGCCGCCTCTTATTGACTGCCTCAAGAAGCCGAACCCCTTCATCTCCGACACCGGTAAGACCCCCATTTTCTGGGCCGATGATCTCCGTCTCCAGGACTTAGGAACCCCGTCGGCCACCCTAGCGCCACCGCCGCCACCCATCAGTGGCTCGGCTGACTTGGACCCTCAACAGCTGGAAATGTATGAAACTAAACCGCCGCCACTGCTGCTCTCCGTCGGCAACGATGTGATGACGAATGAGAAGAAGTTCAACGTGTCGTTAAAGCTCGAGGGACCGTCACCGCGACATTCGTCAGGGCATTCCGATGAGAAGGTGAATAATGGTATGGGTAACAATAATAACCCTACAATGTCACAATCACAGGGAAGAAATAATTCTCATTTGGGTTAA | 1092 | 52.11 | MFHATKKPSSMTSSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELHRNSGSSSTLMDRSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAATAVGAGRFKTTSNNIGTTTNLVSDAANKAFISPPPHTFHPFQDINDLFTSEPPAPAPPLIDCLKKPNPFISDTGKTPIFWADDLRLQDLGTPSATLAPPPPPISGSADLDPQQLEMYETKPPPLLLSVGNDVMTNEKKFNVSLKLEGPSPRHSSGHSDEKVNNGMGNNNNPTMSQSQGRNNSHLG | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4062932 | 4065406 | + | CmaCh02G006690.1 | Cma02g00669 | 288420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00669 | 363 | MobiDBLite | consensus disorder prediction | 322 | 363 | - | - | |
Cma02g00669 | 363 | Pfam | MYB-CC type transfactor, LHEQLE motif | 130 | 169 | IPR025756 | - | |
Cma02g00669 | 363 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 34 | 89 | IPR006447 | GO:0003677 | |
Cma02g00669 | 363 | Gene3D | - | 33 | 91 | - | - | |
Cma02g00669 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 269 | - | - | |
Cma02g00669 | 363 | SUPERFAMILY | Homeodomain-like | 33 | 89 | IPR009057 | - | |
Cma02g00669 | 363 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 31 | 91 | IPR017930 | - | |
Cma02g00669 | 363 | Pfam | Myb-like DNA-binding domain | 37 | 85 | IPR001005 | - | |
Cma02g00669 | 363 | MobiDBLite | consensus disorder prediction | 337 | 363 | - | - | |
Cma02g00669 | 363 | MobiDBLite | consensus disorder prediction | 268 | 287 | - | - | |
Cma02g00669 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 269 | IPR044848 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00669 | Cma-Chr2:4062932 | Cma19g01121 | Cma-Chr19:9211380 | 4.77E-120 | dispersed | |
Cma02g00669 | Cma-Chr2:4062932 | Cma20g00290 | Cma-Chr20:1412786 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34460 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00669 | - | - | csv:101203721 | 577.785 |