Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma02g00669	ATGTTTCATGCCACCAAGAAACCCTCCTCTATGACATCTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCGGGTCTCGTCCTCACTACCGACCCCAAGCCCCGTCTCCGCTGGACGGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCTGACAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGTGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAGTTCAGGCTCGGGAAGCAACCGCACAAGGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCAGCCTTAGAACTTCATAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAATGCAATTGGAGGTCCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACATCTTCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCACTGCCGTCGGCGCCGGACGTTTCAAAACCACTTCCAACAATATTGGAACAACCACCAATCTTGTTTCAGACGCCGCCAACAAAGCCTTCATTTCACCTCCTCCTCACACCTTCCATCCTTTTCAAGACATCAACGACCTATTTACCTCGGAACCACCGGCGCCTGCGCCGCCTCTTATTGACTGCCTCAAGAAGCCGAACCCCTTCATCTCCGACACCGGTAAGACCCCCATTTTCTGGGCCGATGATCTCCGTCTCCAGGACTTAGGAACCCCGTCGGCCACCCTAGCGCCACCGCCGCCACCCATCAGTGGCTCGGCTGACTTGGACCCTCAACAGCTGGAAATGTATGAAACTAAACCGCCGCCACTGCTGCTCTCCGTCGGCAACGATGTGATGACGAATGAGAAGAAGTTCAACGTGTCGTTAAAGCTCGAGGGACCGTCACCGCGACATTCGTCAGGGCATTCCGATGAGAAGGTGAATAATGGTATGGGTAACAATAATAACCCTACAATGTCACAATCACAGGGAAGAAATAATTCTCATTTGGGTTAA	1092	52.11	MFHATKKPSSMTSSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELHRNSGSSSTLMDRSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAATAVGAGRFKTTSNNIGTTTNLVSDAANKAFISPPPHTFHPFQDINDLFTSEPPAPAPPLIDCLKKPNPFISDTGKTPIFWADDLRLQDLGTPSATLAPPPPPISGSADLDPQQLEMYETKPPPLLLSVGNDVMTNEKKFNVSLKLEGPSPRHSSGHSDEKVNNGMGNNNNPTMSQSQGRNNSHLG	363

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	4062932	4065406	+	CmaCh02G006690.1	Cma02g00669	288420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma02g00669	363	MobiDBLite	consensus disorder prediction	322	363	-	-
	Cma02g00669	363	Pfam	MYB-CC type transfactor, LHEQLE motif	130	169	IPR025756	-
	Cma02g00669	363	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	34	89	IPR006447	GO:0003677
	Cma02g00669	363	Gene3D	-	33	91	-	-
	Cma02g00669	363	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR APL	1	269	-	-
	Cma02g00669	363	SUPERFAMILY	Homeodomain-like	33	89	IPR009057	-
	Cma02g00669	363	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	31	91	IPR017930	-
	Cma02g00669	363	Pfam	Myb-like DNA-binding domain	37	85	IPR001005	-
	Cma02g00669	363	MobiDBLite	consensus disorder prediction	337	363	-	-
	Cma02g00669	363	MobiDBLite	consensus disorder prediction	268	287	-	-
	Cma02g00669	363	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	1	269	IPR044848	GO:0003700

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma02g00669	Cma-Chr2:4062932	Cma19g01121	Cma-Chr19:9211380	4.77E-120	dispersed
	Cma02g00669	Cma-Chr2:4062932	Cma20g00290	Cma-Chr20:1412786	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	34460	PF00249	Myb_DNA-binding	2.00E-06	CL0123	Cma	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma02g00669	-		-	csv:101203721	577.785