Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00669 ATGTTTCATGCCACCAAGAAACCCTCCTCTATGACATCTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCGGGTCTCGTCCTCACTACCGACCCCAAGCCCCGTCTCCGCTGGACGGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCTGACAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGTGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAGTTCAGGCTCGGGAAGCAACCGCACAAGGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCAGCCTTAGAACTTCATAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAATGCAATTGGAGGTCCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACATCTTCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCACTGCCGTCGGCGCCGGACGTTTCAAAACCACTTCCAACAATATTGGAACAACCACCAATCTTGTTTCAGACGCCGCCAACAAAGCCTTCATTTCACCTCCTCCTCACACCTTCCATCCTTTTCAAGACATCAACGACCTATTTACCTCGGAACCACCGGCGCCTGCGCCGCCTCTTATTGACTGCCTCAAGAAGCCGAACCCCTTCATCTCCGACACCGGTAAGACCCCCATTTTCTGGGCCGATGATCTCCGTCTCCAGGACTTAGGAACCCCGTCGGCCACCCTAGCGCCACCGCCGCCACCCATCAGTGGCTCGGCTGACTTGGACCCTCAACAGCTGGAAATGTATGAAACTAAACCGCCGCCACTGCTGCTCTCCGTCGGCAACGATGTGATGACGAATGAGAAGAAGTTCAACGTGTCGTTAAAGCTCGAGGGACCGTCACCGCGACATTCGTCAGGGCATTCCGATGAGAAGGTGAATAATGGTATGGGTAACAATAATAACCCTACAATGTCACAATCACAGGGAAGAAATAATTCTCATTTGGGTTAA 1092 52.11 MFHATKKPSSMTSSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELHRNSGSSSTLMDRSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAATAVGAGRFKTTSNNIGTTTNLVSDAANKAFISPPPHTFHPFQDINDLFTSEPPAPAPPLIDCLKKPNPFISDTGKTPIFWADDLRLQDLGTPSATLAPPPPPISGSADLDPQQLEMYETKPPPLLLSVGNDVMTNEKKFNVSLKLEGPSPRHSSGHSDEKVNNGMGNNNNPTMSQSQGRNNSHLG 363
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 4062932 4065406 + CmaCh02G006690.1 Cma02g00669 288420
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00669 363 MobiDBLite consensus disorder prediction 322 363 - -
Cma02g00669 363 Pfam MYB-CC type transfactor, LHEQLE motif 130 169 IPR025756 -
Cma02g00669 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677
Cma02g00669 363 Gene3D - 33 91 - -
Cma02g00669 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 269 - -
Cma02g00669 363 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Cma02g00669 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Cma02g00669 363 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Cma02g00669 363 MobiDBLite consensus disorder prediction 337 363 - -
Cma02g00669 363 MobiDBLite consensus disorder prediction 268 287 - -
Cma02g00669 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 269 IPR044848 GO:0003700
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00669 Cma-Chr2:4062932 Cma19g01121 Cma-Chr19:9211380 4.77E-120 dispersed
Cma02g00669 Cma-Chr2:4062932 Cma20g00290 Cma-Chr20:1412786 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34460 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00669 - - csv:101203721 577.785