Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00682 ATGAAGCTCTGTTCAGCATCAGTGCTTTCTCTCGTTTTGATTATTGTTAATCTACTTCACCTTGTCATTGCCGACCTGAACTCAGATAAGCAGGCTCTTCTCGACTTCCTATCGTCTGTTCCACATCGTCGGAACCTTAACTGGAACGATAGTTCATCAGTATGCACTACTTGGATTGGCATTACTTGCAATGCAGATGGAACCCGTGTGCTTACCCTCCGACTTCCTGGGATTGGACTGATTGGTTCAATTCCTCCTAACACTCTAGGGAAACTCGATGGTCTTAAGATTCTCAGTCTTCGTTCCAACCTCCTTAGCGGAAAAATACCGTTCGATATTACCTCACTTCCTTCTCTCCAATATCTTTATCTCCAGCATAATAACTTCTCTGGTGACTTCCCTTCATCCTTTTCACCAACACTCAATGTATTGGATCTATCATTCAATTCACTCGAAGGAACGATTTCAAAGACTATCCAAAATTTGACACGGCTAATTGGATTGAACCTCGGGAACAACAATCTTTCTGGTTCTATACCAGATATCAACCTCCCTAAGCTCAAGCATTTCGATGTAAGCTATAACCATCTTAATGGTTCGATACCGACTTTTTTTAGGACATTCCCGGACTCATCCTTCATTGGAAATCCTTTATTGTGTGGATTGCCTCTAAAATCTTGCTCCATAGACCTATCTCCAGCACCTGCCATTTCTCCAAAGCAGAAAAGACTGAAGATGGGAGTTATCATAGCTATTGCAGTTGGTGGATTTTTGGTTCTGTTCCTTGTAGTTCTTTTCGTGATCGTGTGCTGTTTAAAGAGAAAGGACGGCGAAGGCACTGGCACGATAAAGGGGAAAGTTTCTGGTGGTGGGAGAAGCGAAAAACCGAAAGAGGAGTTCGGAAGTGGCGTGCAGGAGGCTGAGAAAAACAAGCTGGTGTTCTTTGAAGGTTGTTCATTTAACTTTGATCTTGAAGACCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTCTTGGAGGAACCTACCACTGTTGTTGTGAAAAGATTGAAGGAAGTGGTGGTCGGGAAGAGGGAGTTTGAACAACAGATGGACACGGTCGGCAGGGTGGGGCAGCACCCGAACGTCATGCCACTCCGAGCATATTATTACTCGAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCCGTTGGCAGCTTGTCGTCACTTTTGCATGGAAACAGAGGAGGGGAAAGAACACCAGTTGACTGGGACACAAGACTCAAAATTGCTCTTACAGCAGCAAAGGGCATTGCTCATATTCATACAATGGGTGGTCCAAAGTTCACTCATGGAAACATCAAGGCCTCAAATATTCTCCTAAACCAAGATCTCAATGCTTCTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCACCCGAGGTGATCGAAGCTCGTAAACACACTCACAAGTCAGATGTTTACAGCTTTGGTGTTCTTCTTCTCGAAATGCTAACTGGAAAAGCTCCCCTCCAATCACCTGGTCGTGACGAAATGGTCGATCTTCCTCGGTGGGTCCAATCGGTCGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTTGAGCTAATGAGGTACCAGAATATTGAAGAAGAAATGGTGCAGATGTTGCAAATAGCAATGACTTGTGTAGCGAAGCTGCCCGACATGAGACCGAACATGGACGAAGTTGTTAGAATGATCGAAGAAATACGGCAATCCGACTCGGAGAACCGGCCATCTTCCGAAGAAAACAGATCCAAGGACTCAAATGCTGCGAAAATTATTTCATTCAGGATTCGCTTCTTCTCTCTTCGAAATTGTGAAGCCCTTCATCGTATACAGACCGGCCAAGGTTTCTTGTTCGTATTCTGGAAATTAATGGCTTCAAAGCGGATTCTTAAAGAGCTCAAGGATTTGCAGAAGGATCCTCCTACTTCTTGCAGCGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAACTATCATGGGACCTACTGACTCTCCATACTCTGGAGGTGTATTCTTAGTTTCTATCCATTTTCCTCCGGACTATCCTTTCAAGCCTCCAAAGGTGGCTTTTAGGACTAAGGTGTTCCACCCGAACATTAATAGCAATGGTAGCATATGTCTGGACATTCTTAAGGAACAGTGGAGCCCTGCGCTAACTATTTCCAAGGTGCTTTTGTCCATATGCTCACTGCTAACTGACCCCAACCCGGATGATCCTCTCGTTCCCGAAATTGCTCACATGTACAAGACTGATAGAGCCAAGTATGAAGGTACTGCACGCAGCTGGACTCAGAAGTATGCTATGGGATAA 2409 44.96 MKLCSASVLSLVLIIVNLLHLVIADLNSDKQALLDFLSSVPHRRNLNWNDSSSVCTTWIGITCNADGTRVLTLRLPGIGLIGSIPPNTLGKLDGLKILSLRSNLLSGKIPFDITSLPSLQYLYLQHNNFSGDFPSSFSPTLNVLDLSFNSLEGTISKTIQNLTRLIGLNLGNNNLSGSIPDINLPKLKHFDVSYNHLNGSIPTFFRTFPDSSFIGNPLLCGLPLKSCSIDLSPAPAISPKQKRLKMGVIIAIAVGGFLVLFLVVLFVIVCCLKRKDGEGTGTIKGKVSGGGRSEKPKEEFGSGVQEAEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDTVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPVGSLSSLLHGNRGGERTPVDWDTRLKIALTAAKGIAHIHTMGGPKFTHGNIKASNILLNQDLNASVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENRSKDSNAAKIISFRIRFFSLRNCEALHRIQTGQGFLFVFWKLMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYSGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEGTARSWTQKYAMG 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4175665 4180945 + CmaCh02G006820.1 Cma02g00682 288433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00682 802 Pfam Leucine rich repeat 81 129 IPR001611 GO:0005515
Cma02g00682 802 Gene3D Transferase(Phosphotransferase) domain 1 406 624 - -
Cma02g00682 802 Gene3D Ubiquitin Conjugating Enzyme 652 802 IPR016135 -
Cma02g00682 802 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Cma02g00682 802 SUPERFAMILY Protein kinase-like (PK-like) 333 596 IPR011009 -
Cma02g00682 802 SUPERFAMILY L domain-like 38 226 - -
Cma02g00682 802 PANTHER RECEPTOR-LIKE KINASE 9 619 - -
Cma02g00682 802 CDD STKc_IRAK 335 598 - -
Cma02g00682 802 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cma02g00682 802 Pfam Protein kinase domain 332 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00682 802 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 728 743 IPR023313 -
Cma02g00682 802 PANTHER OS05G0588300 PROTEIN 9 619 - -
Cma02g00682 802 Gene3D Ribonuclease Inhibitor 141 228 IPR032675 -
Cma02g00682 802 ProSiteProfiles Protein kinase domain profile. 329 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00682 802 Pfam Ubiquitin-conjugating enzyme 659 795 IPR000608 -
Cma02g00682 802 ProSitePatterns Protein kinases ATP-binding region signature. 335 366 IPR017441 GO:0005524
Cma02g00682 802 Gene3D Ribonuclease Inhibitor 27 140 IPR032675 -
Cma02g00682 802 MobiDBLite consensus disorder prediction 282 303 - -
Cma02g00682 802 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 655 801 IPR000608 -
Cma02g00682 802 CDD UBCc 657 796 IPR000608 -
Cma02g00682 802 SMART ubc_7 658 801 - -
Cma02g00682 802 SUPERFAMILY UBC-like 654 801 IPR016135 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00682 Cma20g00302 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00682 Cma-Chr2:4175665 Cma02g01404 Cma-Chr2:8128944 0 dispersed
Cma03g00286 Cma-Chr3:3796320 Cma02g00682 Cma-Chr2:4175665 4.45E-104 dispersed
Cma07g01210 Cma-Chr7:6652028 Cma02g00682 Cma-Chr2:4175665 1.72E-76 dispersed
Cma09g01141 Cma-Chr9:6471068 Cma02g00682 Cma-Chr2:4175665 9.49E-95 dispersed
Cma19g00737 Cma-Chr19:7384133 Cma02g00682 Cma-Chr2:4175665 6.62E-95 dispersed
Cma04g00573 Cma-Chr4:2920426 Cma02g00682 Cma-Chr2:4175665 8.48E-40 transposed
Cma10g00034 Cma-Chr10:123234 Cma02g00682 Cma-Chr2:4175665 6.33E-41 transposed
Cma20g00302 Cma-Chr20:1479484 Cma02g00682 Cma-Chr2:4175665 0 transposed
Cma16g00442 Cma-Chr16:2204068 Cma02g00682 Cma-Chr2:4175665 2.19E-38 transposed
Cma02g00682 Cma-Chr2:4175665 Cma20g00301 Cma-Chr20:1476266 1.72E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68335 PF00069 Pkinase 2.30E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00682 - - csv:101221378 1037.33