Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00706 ATGAGCTTAAACCAAGCTTCCATCTTAATCCTCTCCATTAATCCTCGATCTCGAGATTTTGCTGCTCTTAACCACAAGCCGCCTCTTCGCTTAACCAAAACGATTGGGATGGATAATAAGCAGATTGTGGTGGTTCAAAGATATGAATTAGGGAGATTACTCGGCCAAGGAACCTTTGCGAAGGTATATTATGCGAGAAATACAGAAACTAATCAAAGCGTGGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCACTAATAGATCAGATTAAGCGTGAAATATCTATTATGCGACTTGTTAGGCATCCTAATATTATACATCTATATGAGGTTATGGCCACCAAGACTAAGATCTACTTCGCCTTGGAATATGCTAAAGGCGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAGGGAAGAAGTTGCTTGGAAATACTTTTATCAGTTGATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCAGAGAACCTACTTCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGCCAAGATGGGTTGCTACACACTACTTGTGGTACTCCAGCTTATGTTGCTCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGCAGTATTGTTCGTCTTATTGGCAGGTTATCTTCCATTCCACGATTCAAATTTAATGGAGATGTATAGGAAGATTGGAAAAGCGGACTATAAATGCCCTAGTTGGTTCCCTCGTGATGTACGTCGGCTGCTTATGAGGATGCTTGATCCAAACCCCTCTACTAGAACTTCCATAGCAATGATAAGGCAAAGTTCTTGGTTCAAAAAAGGATTGAGGTTTAAGATGTTAAGAAGTGAAACAGGAAGTGATGCTAAAGCGGGTGAAGATGCAGCAGCTGTTTCTGGACCATCAGAGAGTAGTAGTGTGTCAGCAGATGGAAATCAAGAGCCAGATAGACCTCCGACGTTGAACGCTTTCGATATCATCTCCCTTTCTGCTGGGTTCAATCTATCCAGTTTATTTGAAGACAACTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCCAAGCTAGAAGATATCGCTAAACTTCTCAGGTTTCGGGTGCAGAAGAAGGAAGCAGGCCTACTGAAGTTCGAGGCGCTGACAGAGGGTAAAAAGGGGCCTTTGTCCATTGATACAGAGATATTTGAGATTACTCCATCCTTTTATTTGGTGGAGATGAAAAAATCCAATGGGGACACATTGGAGTATCAGAAGATATTAAAAGAGGACATAAGACCAGCTCTACAGGATATTGTATGGGTATGGCGAGCCGAGCAGGAGCAGGAGCAGGAGCAGCAGCAACAACAGCCTCAGCCTCTGCCTCCGCATCAGCCTCTCGAACTGCAGGATCGGGATCTATATCTGGACCAAGAGGGTGTATCACAACAGCAGTAG 1545 42.85 MSLNQASILILSINPRSRDFAALNHKPPLRLTKTIGMDNKQIVVVQRYELGRLLGQGTFAKVYYARNTETNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIIHLYEVMATKTKIYFALEYAKGGELFDKVAKGRLREEVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGAVLFVLLAGYLPFHDSNLMEMYRKIGKADYKCPSWFPRDVRRLLMRMLDPNPSTRTSIAMIRQSSWFKKGLRFKMLRSETGSDAKAGEDAAAVSGPSESSSVSADGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEDIAKLLRFRVQKKEAGLLKFEALTEGKKGPLSIDTEIFEITPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRAEQEQEQEQQQQQPQPLPPHQPLELQDRDLYLDQEGVSQQQ 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4277266 4279868 - CmaCh02G007060.1 Cma02g00706 288457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00706 514 MobiDBLite consensus disorder prediction 478 514 - -
Cma02g00706 514 Pfam NAF domain 348 406 IPR004041 GO:0007165
Cma02g00706 514 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Cma02g00706 514 PANTHER - 38 485 - -
Cma02g00706 514 Pfam Protein kinase domain 48 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00706 514 CDD STKc_SnRK3 47 301 - -
Cma02g00706 514 CDD CIPK_C 352 466 - -
Cma02g00706 514 Gene3D Kinase associated domain 1, KA1 346 471 - -
Cma02g00706 514 Gene3D Transferase(Phosphotransferase) domain 1 38 343 - -
Cma02g00706 514 ProSiteProfiles Protein kinase domain profile. 48 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00706 514 MobiDBLite consensus disorder prediction 317 345 - -
Cma02g00706 514 MobiDBLite consensus disorder prediction 329 345 - -
Cma02g00706 514 SMART serkin_6 48 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00706 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cma02g00706 514 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 38 485 - -
Cma02g00706 514 ProSiteProfiles NAF domain profile. 346 370 IPR018451 GO:0007165
Cma02g00706 514 SUPERFAMILY Protein kinase-like (PK-like) 44 303 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00706 Cma-Chr2:4277266 Cma03g00303 Cma-Chr3:3915626 0 dispersed
Cma07g01230 Cma-Chr7:6791652 Cma02g00706 Cma-Chr2:4277266 0 transposed
Cma02g00706 Cma-Chr2:4277266 Cma20g00312 Cma-Chr20:1546301 5.63E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68338 PF00069 Pkinase 6.10E-74 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00706 - - csv:101206404 780.015