Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00707 ATGGGCGCTTCTCTTCTCCGTCTCCACTTTCACGACTGTTTTGTTAATGGTTGTGATGGATCTATTCTTCTCGAAGATACTCCTACTTTTACTGAAGAGCAAACTACAGCTCCCAATGTTAGATCCGTTAGAGGGTTCGATGTGATTGAGAGTATAAAGAAGAATGTCGAAAAAGTTTGTCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTCGGGACTCCATTGTAGCACTTGGAGGGCCGAGTTGGGAGGTGAAATTAGGAAGGAGAGATTCCCAAACAGCTAGCTTCTCTAATGTCGCTGGTGCCATTCCTCCACCAACCTCTACACTCGACAACCTTATCGATCGGTTCAACACTAAAGGCCTTTCCCCTCGAGATTTGGTTGCCTTATCTGGGGCTCACACGATCGGGCAAGCAAAATGTTTGTTTTTCAAGAACCGTATATACAACGAGACCAACATTGATGAATCTTTCGCTGAGGAGAGACAGAGGAATTGCCCAGTAAATGGAGGAGACGATAACCGTGCTCCTCTAGACTTTGAAACTCCAAATCTCTTTGACAACTACTACTACAAGAACCTTTTGGATCAAAAGGCTCTACTCCGCTCGGATCAAGTGCTGCATGATGGTGGATCCACTGATTCCTTAGTTGAACTATACAGTGACGACAGTGATGCCTTTGAAGCTGACTTTGTGACAGCTATGATCAAAATGAGCGACATTGAGCCACTCACAGGATCACAAGGCGAGATTCGAAACGTGTGCAATCTAAAATACTGGGCTCGATCCAACCAACTTCTTAGTCCATTAACCAAGTTCATGGGCTCAGTTATGGGCTCAGTTATGGGCTTACAGAAACCAAAACCAGGACCTAAAATGGCCGCTCTCAATCGGAAGCGACGAAACATTTGCATAGCCGTATTACTTTCCCTAATCGTGCTCGTAATCTTGATCCTCATTTTAGCATTTACAGTTTTCAAGCCCAAGCAGCCCACCATCACCGTCGATTCAGTTTCTTTGCTCGATCTCAACATTTCTCTGAACGCTGCGAGGTTCGGCGTCGATCTGAATTTGACTCTGATTGTGCAACTCACCGTCGAGAATCCGAATAAGGTAGCCTTCCAACACTCCGATGGCACCGCCGTCGTGAGTTACAGAGGCGAAGAAGTCGCAGAAGCGCCGATTCCGTCTGGTCGGTTGTCGCCCGACGGGACAGAGAAAATGAACCTAACGCTGACGATGATGGCGGACCGGCTACTAGCCAAGTCGGAGCTGTTCTCCGATGTGATCGCTGGTGAACTTCCGATCAGCACTTTCGCTCGGCTGGCCGGGAAAATGACGGTGATCGGTGTTTTCAAGATTCGTGTTGTGGCATTGTCGTCTTGTGATCTCACCATCGACATTAGAAACAGAAGCGTTGAGGATCAGCGATGCGAATATCGGACTAAGCTCTAA 1467 47.17 MGASLLRLHFHDCFVNGCDGSILLEDTPTFTEEQTTAPNVRSVRGFDVIESIKKNVEKVCPGVVSCADILTLSARDSIVALGGPSWEVKLGRRDSQTASFSNVAGAIPPPTSTLDNLIDRFNTKGLSPRDLVALSGAHTIGQAKCLFFKNRIYNETNIDESFAEERQRNCPVNGGDDNRAPLDFETPNLFDNYYYKNLLDQKALLRSDQVLHDGGSTDSLVELYSDDSDAFEADFVTAMIKMSDIEPLTGSQGEIRNVCNLKYWARSNQLLSPLTKFMGSVMGSVMGLQKPKPGPKMAALNRKRRNICIAVLLSLIVLVILILILAFTVFKPKQPTITVDSVSLLDLNISLNAARFGVDLNLTLIVQLTVENPNKVAFQHSDGTAVVSYRGEEVAEAPIPSGRLSPDGTEKMNLTLTMMADRLLAKSELFSDVIAGELPISTFARLAGKMTVIGVFKIRVVALSSCDLTIDIRNRSVEDQRCEYRTKL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4281800 4285568 - CmaCh02G007070.1 Cma02g00707 288458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00707 488 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 SUPERFAMILY Heme-dependent peroxidases 1 260 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 Pfam Peroxidase 1 227 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 Gene3D Peroxidase, domain 2 108 242 - -
Cma02g00707 488 Gene3D - 323 469 - -
Cma02g00707 488 CDD secretory_peroxidase 1 260 IPR033905 GO:0004601|GO:0042744
Cma02g00707 488 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Cma02g00707 488 PRINTS Plant peroxidase signature 181 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Plant peroxidase signature 197 214 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PRINTS Plant peroxidase signature 237 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 Pfam Late embryogenesis abundant protein 368 458 IPR004864 -
Cma02g00707 488 PANTHER PEROXIDASE 1 260 - -
Cma02g00707 488 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Cma02g00707 488 Gene3D - 1 260 - -
Cma02g00707 488 SUPERFAMILY LEA14-like 317 424 - -
Cma02g00707 488 ProSiteProfiles Plant heme peroxidase family profile. 1 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g00707 488 PANTHER PEROXIDASE 72-RELATED 1 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00721 Cma02g00707 CCT
Cma02g00707 Cma20g00313 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00707 Cma-Chr2:4281800 Cma20g00314 Cma-Chr20:1557538 6.74E-177 dispersed
Cma03g00266 Cma-Chr3:3677324 Cma02g00707 Cma-Chr2:4281800 1.15E-52 dispersed
Cma07g01192 Cma-Chr7:6551472 Cma02g00707 Cma-Chr2:4281800 3.61E-65 dispersed
Cma17g00458 Cma-Chr17:2749663 Cma02g00707 Cma-Chr2:4281800 8.94E-21 dispersed
Cma02g00707 Cma-Chr2:4281800 Cma20g00313 Cma-Chr20:1550512 9.09E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00707 K00430 - csv:101204245 483.796