Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00709 ATGGTTATGGAGTTCTTCTTCTCCAGTAGAGTCGAGGAGGATCCCAACGACGGCCGTCCCAGACTGCCGGAGAGTACTGCGCCGCCCATTTCGTCTAAGTTCAGTTCGACTCCGACTCCGAATCCGCCATTGTTGTCGGCCATGTCTCAGCCTCTTTTCTCCCCTTCTTCCTTCTTCACTATCCCTCCAGGGATCAGCCCCACCCAACTTCTTGATTCCCCTGTTCTTCTTACCTCCTCTAATTTTCAGGCATCGCCGACCACCGGAGCAATTTCGACCGGCCACCACCAAAAGAACATGAAACAAGAACAACATAACTTAGCTGAGTTCTCATTTCCTCGTACAAATCCCACAAAATCATCATCGTCATCATCAATTATGTTTCAATCGTCTTCAATGCAGCAAAATCAGCCATGGGTATCTCAAGCCGCCTTCAATTTCCCCCCGGAGACCACCATGAACGGCGGTTCGAAATCCGACCAGCACCCACCATCTCAACCAAAAAACAGAGCATCTGACGACGGGTATAATTGGAGGAAATACGGCCAAAAACTTGTAAAAGGAAGTGAAAATCCCAGAAGCTATTACAAATGTACACACCCTACTTGCCCTGTTAGAAAGCAAGTCGAAAAATCATTGAACGGCCAAATTACAGAAATCGTTTACAAAAGTAAACACAATCATCCAAAACCAGAGTTCCCAAGAAGATCATCATCGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCTATCACAAGCTTTACCTCAAACAATGGCGGCAGAGCCAAAGCATTCAATGGCCTCTGATTCCATTCCGACGCCGGAGAACTCTTCAACCACGATTGGGGATGATGATTCCGATGAACAGGATGCAAAAAGATGGAAAAGCGAGAGCGAGAACGAAATTATATCGGCCGCCGGAGGGAAAACGGTGAGAGAACAGAGGGTTGTGGTTCAAACGATTAGTAGCGTTGATAAACTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTTGTGAAGGGAAATCCAAATCCAAGGAGCTACTACAAGTGCACGTACGCAGGCTGTGGAGTGAGAAAGCACATAGAGAGGGCGTCCCACGATTTAAAGGCAGTCATGACTACCTACGAAGGCAAGCATAACCATGAAATTCCGGCAGCCCGCGGCGGAGGTAGCAGACCAGTATCCAATAATCACGGCAATGACAACGGTCGTGCATCAAACGGGGGCGGCCACGTATGGCCGAGTTCCGAGATTTCTGGTGGCGATGATGCATTCTCTAACATGCTGTGGAGGACCAAAGAAGAGACCGCCGATGAGATTTTCCGGTCGTTGTTAGACTGA 1359 47.83 MVMEFFFSSRVEEDPNDGRPRLPESTAPPISSKFSSTPTPNPPLLSAMSQPLFSPSSFFTIPPGISPTQLLDSPVLLTSSNFQASPTTGAISTGHHQKNMKQEQHNLAEFSFPRTNPTKSSSSSSIMFQSSSMQQNQPWVSQAAFNFPPETTMNGGSKSDQHPPSQPKNRASDDGYNWRKYGQKLVKGSENPRSYYKCTHPTCPVRKQVEKSLNGQITEIVYKSKHNHPKPEFPRRSSSASSSSSSSSSSSWLSQALPQTMAAEPKHSMASDSIPTPENSSTTIGDDDSDEQDAKRWKSESENEIISAAGGKTVREQRVVVQTISSVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLKAVMTTYEGKHNHEIPAARGGGSRPVSNNHGNDNGRASNGGGHVWPSSEISGGDDAFSNMLWRTKEETADEIFRSLLD 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4293272 4296213 + CmaCh02G007090.1 Cma02g00709 288460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00709 452 MobiDBLite consensus disorder prediction 234 258 - -
Cma02g00709 452 SMART WRKY_cls 172 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 SMART WRKY_cls 330 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 SUPERFAMILY WRKY DNA-binding domain 322 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 MobiDBLite consensus disorder prediction 112 133 - -
Cma02g00709 452 MobiDBLite consensus disorder prediction 1 48 - -
Cma02g00709 452 Gene3D WRKY domain 315 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 Gene3D WRKY domain 160 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 ProSiteProfiles WRKY domain profile. 325 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 MobiDBLite consensus disorder prediction 222 304 - -
Cma02g00709 452 MobiDBLite consensus disorder prediction 288 302 - -
Cma02g00709 452 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 39 403 IPR044810 GO:0003700
Cma02g00709 452 MobiDBLite consensus disorder prediction 146 177 - -
Cma02g00709 452 SUPERFAMILY WRKY DNA-binding domain 170 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 MobiDBLite consensus disorder prediction 146 172 - -
Cma02g00709 452 PANTHER WRKY TRANSCRIPTION FACTOR 33-RELATED 39 403 - -
Cma02g00709 452 MobiDBLite consensus disorder prediction 387 425 - -
Cma02g00709 452 MobiDBLite consensus disorder prediction 28 48 - -
Cma02g00709 452 Pfam WRKY DNA -binding domain 173 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 Pfam WRKY DNA -binding domain 331 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g00709 452 ProSiteProfiles WRKY domain profile. 173 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00709 Cma13g00029 CCT
Cma01g00711 Cma02g00709 CCT
Cma02g00709 Cma13g00029 ECH
Cma01g00711 Cma02g00709 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00711 Cma-Chr1:3726739 Cma02g00709 Cma-Chr2:4293272 6.26E-115 dispersed
Cma02g00709 Cma-Chr2:4293272 Cma14g00032 Cma-Chr14:149735 3.40E-94 dispersed
Cma13g00029 Cma-Chr13:373134 Cma02g00709 Cma-Chr2:4293272 7.71E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34466 PF03106 WRKY 4.70E-23 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00709 K13424 - tcc:18591046 402.519