Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00724 ATGGCTACCGAGGCGACTGAAGCTACGACTAAGTTTCAGAGTCCGGGTTTTCGCCCGGTACCGTCGCCTCCGGATTTCCATCCCGAAATTATTGTCTCAACCCATGATGGTCTCCGGTTCTGGCAGTTCATGATTGCCGGTTCAGTCGCGGGGTCTGTGGAGCATATGACTATGTTTCCGGTTGATACCGTCAAGACCCATATGCAAGCCCTTGGTTCCTGTCCGATTAAATCTGTTGGAGTTCGACAAGCCCTTCGGTCAATTTTGAAGTCAGAGGGACCTGCTGGTTTTTATCGTGGTATTGGTGCTATGGGCCTCGGAGCTGGTCCTGCACATGCTGTGTATTTTACAGTTTATGAGAATTGTAAAAGGGTTTTCTCTGGTGGGGATCCTAATAATTCAGTAGCCCACGCTGCTTCTGGCGTCTGCGCGACGGTGGCGAGTGATGCTGTCTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGAGTAATAGCCCTTACAAGGGAGTTCTGGATTGTGTCAAAAGGGTCCTAAGAGACGAGGGTTTTAAGGCATTTTACGCTTCATATAGAACTACAGTGTTAATGAATGCTCCATTTACTGCTGTGCATTTTGCAACTTATGAAGCTGCAAAGAGAGGTTTAATGGAGGTTTCGCCAGAGAGTGCTAATGATGAACAGTGGATTGCTCATGCGACAGCAGGAGCTGCTGCTGGAGCTTTAGCCGCACTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTGTATGTGGATGCGATAGATTCAAAAGTGGGTCGATTGGGGACGTGATTCGAACGATACTGAAGAAGGATGGATATGGAGGGCTTATGAGGGGATGGGTTCCAAGGATGCTGTTCCATACGCCCGCTGCAGCCATTTGCTGGTCGACATACGAAGCAATAAAATCGTTCTTCCAAGACCTCAACAGCAGCAGTGACAATGTAACCTGA 993 48.34 MATEATEATTKFQSPGFRPVPSPPDFHPEIIVSTHDGLRFWQFMIAGSVAGSVEHMTMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKRVFSGGDPNNSVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSPYKGVLDCVKRVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESANDEQWIAHATAGAAAGALAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIRTILKKDGYGGLMRGWVPRMLFHTPAAAICWSTYEAIKSFFQDLNSSSDNVT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4396902 4400472 - CmaCh02G007240.1 Cma02g00724 288475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00724 330 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Cma02g00724 330 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Cma02g00724 330 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Cma02g00724 330 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Cma02g00724 330 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Cma02g00724 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Cma02g00724 330 Pfam Mitochondrial carrier protein 133 219 IPR018108 -
Cma02g00724 330 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Cma02g00724 330 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Cma02g00724 330 Gene3D Mitochondrial carrier domain 24 166 IPR023395 -
Cma02g00724 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Cma02g00724 330 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 5 326 - -
Cma02g00724 330 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Cma02g00724 330 Gene3D Mitochondrial carrier domain 167 330 IPR023395 -
Cma02g00724 330 PANTHER MITOFERRIN-1-RELATED 5 326 - -
Cma02g00724 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00724 Cma20g00327 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00724 Cma-Chr2:4396902 Cma03g00330 Cma-Chr3:4065207 2.05E-16 dispersed
Cma04g01408 Cma-Chr4:7200150 Cma02g00724 Cma-Chr2:4396902 3.27E-07 dispersed
Cma02g00724 Cma-Chr2:4396902 Cma20g00327 Cma-Chr20:1604747 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00724 K15113 - csv:101215924 610.527