Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00725 ATGGGAGCTGGTTCCTCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGATGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGACGCTGTGAACAGTATGGTATATGAAGCTAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGGGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAGCTGGCGGCAGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTTCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCCCTGTGGAGTTGA 480 50.83 MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4403586 4404065 + CmaCh02G007250.1 Cma02g00725 288476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00725 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 124 - -
Cma02g00725 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 124 - -
Cma02g00725 159 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cma02g00725 159 Coils Coil 86 113 - -
Cma02g00725 159 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00725 Cma-Chr2:4403586 Cma13g00447 Cma-Chr13:4990036 1.32E-51 dispersed
Cma04g01074 Cma-Chr4:5545442 Cma02g00725 Cma-Chr2:4403586 2.08E-49 dispersed
Cma10g00105 Cma-Chr10:429384 Cma02g00725 Cma-Chr2:4403586 2.71E-49 dispersed
Cma19g01089 Cma-Chr19:9065665 Cma02g00725 Cma-Chr2:4403586 5.54E-46 dispersed
Cma02g00725 Cma-Chr2:4403586 Cma20g00329 Cma-Chr20:1612823 1.69E-66 wgd
Cma02g00725 Cma-Chr2:4403586 Cma04g00134 Cma-Chr4:631586 6.09E-67 wgd
Cma02g00725 Cma-Chr2:4403586 Cma04g01102 Cma-Chr4:5668634 9.09E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34467 PF03195 LOB 2.20E-40 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00725 - - csv:101207667 229.18