Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00741 ATGATGGATGGTTGCAATAGAAATCTGGGGTTTTGTATATCGGTTTTGCTCGAATTTTCGGCCACGGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCATGATATTGATGAAGCAAGTTTGTGGTATGGGAGAGTTTTTGGTTCCAAAAAGATGGGATATGAAGAACGAACCCCTCTTATGGTTGCAGCCATGTTTGGGAGCTTGAATGTCCTTTCGTATATTGTTCATAGTGGTCGTGTTGATGTTAATCGAGCTTGCGGTTCGGATGGTGCAACCGCTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGCTGATCAGGTTGTCAAATACTTGCTTGATGCTTTTGCTGATGTGAATGTCGTCGATGCGAATGGCTACCGCCCTGGGGACTTGATTGCTCCTGATTTTACTTTGGCATCTTTGTATTCGAGGAGGAAGGCATTACAACAGTTGCTAAAGGGATATGGTAACGACGAGGACGTTCTTGGTTCATCTGAGATGATATTTTACGAGAGGGAAACACAGGAGGCACGGGAGGTTTTGACGCCTCGTGTTTCGAGAGATGGAATGGAGAAGAAAGAGTATCCAGTTGATCACTCGCTTCCCGACATCAAGAATGGGATTTATAGTACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCCCATGATTGGACGGAGTGCCCGTTTGTTCACCCGGGCGAAAACGCAAGAAGGCGGGATCCTAGGAAATACCATTACAGCTGCGTCCCGTGTCCTGAATTTAGAAAGGGCGCATGCAGGCAGGGGGATTCCTGTGATTATGCTCATGGAATCTTTGAATGTTGGCTCCATCCTGCTCAATACCGCACCCGTCTTTGCAAGGACGAAACGGGATGTACCCGAAAGGTCTGTTTCTTTGCTCACAAACCAGAGGAGCTACGCCCCTTGTATGCTTCGACTGGTTCTGCTGTACTGTCCCCAAGATCGATCTCTGGTTTGTCACTAGACATTCCATCAATCAGCCTGCTTACACTTGGTTCTCCGTCATCGACCCCGCCGTTGACTCCTGGAGTTTCTTCTCCGCTGGGTGGAACCATGTGGCAGACTCAATGTAATATTGCGCCTCCGACGTTGCAGCTTCCGGGTAGTCGGTTGAAGGCTGCTTTGAGTGCAAGAGACATGGATTTAGATGCTGAGTTACTCGGTCTCGAAAGTCAGCGATGTAGACAGCAACAGTTTATGGACGAGTTATCGTGTCTACCTTCCCCTTCCAGATGGAACAATGGCATACCAACCCCTACATCTTTTCCATCTCCAAGGAGTAGAAATGGAGAATTGAACGGGCTCGGAAGCATGAATCCTACTAACCTCGAGAACATTTACGGATCATCGGTAGATCCCGCACTCTTCCCTCAATTACAAGGATTCTCGCTCGATTCCGTGCAATCCCCGTCCGGGATGCGCCAAAGCCTGAACCAGTCATTCCTATCAAACTATGCTAACAGCATTGGATCTCCTCCTGCAAGGTCATCTCAACCATTTGGCCATGACTCATCTGTGTCTGCTGCAGAAAGCCTTCTGAGTTCCAGGGCTGCTGCTTTCGCCAAGCGCAGCCACAGCTTTATCGAACGCGGTGTAGTGAACCGTCATTCTGGACATTCACCTCCAGCTACATCTACAACCTTCACGCCTTCAAACTTCCCTGATTGGGGTTCGCCCAACGGAAAACTAGACTGGGGAATTCACGGAGAAGAACTCACCAAGTTAAGAAAGTCCGCATCATTCGGGCTACGAAGTAATTCCCTCGCAACACCTGCAATGCACACTAGTTCTTCCAAGCCAGACGTCTCCTGGGTTCAGTCCCTGGTGAACGATGCTCCGACCGAGAACTCCTTGCAGTTGAGTATAGACGAGCAGAAGCAGCTTTGTCATATCGACAATGGGGATTCAAAGCTGTACATGGAACAGAAGCAGCTGGTCGCTTAA 2004 48.3 MMDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEDGHDIDEASLWYGRVFGSKKMGYEERTPLMVAAMFGSLNVLSYIVHSGRVDVNRACGSDGATALHCAVAGGSAVADQVVKYLLDAFADVNVVDANGYRPGDLIAPDFTLASLYSRRKALQQLLKGYGNDEDVLGSSEMIFYERETQEAREVLTPRVSRDGMEKKEYPVDHSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGACRQGDSCDYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSISGLSLDIPSISLLTLGSPSSTPPLTPGVSSPLGGTMWQTQCNIAPPTLQLPGSRLKAALSARDMDLDAELLGLESQRCRQQQFMDELSCLPSPSRWNNGIPTPTSFPSPRSRNGELNGLGSMNPTNLENIYGSSVDPALFPQLQGFSLDSVQSPSGMRQSLNQSFLSNYANSIGSPPARSSQPFGHDSSVSAAESLLSSRAAAFAKRSHSFIERGVVNRHSGHSPPATSTTFTPSNFPDWGSPNGKLDWGIHGEELTKLRKSASFGLRSNSLATPAMHTSSSKPDVSWVQSLVNDAPTENSLQLSIDEQKQLCHIDNGDSKLYMEQKQLVA 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4498059 4500062 - CmaCh02G007410.1 Cma02g00741 288492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00741 667 MobiDBLite consensus disorder prediction 553 575 - -
Cma02g00741 667 SUPERFAMILY Ankyrin repeat 55 134 IPR036770 -
Cma02g00741 667 Gene3D - 259 321 - -
Cma02g00741 667 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Cma02g00741 667 MobiDBLite consensus disorder prediction 558 575 - -
Cma02g00741 667 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Cma02g00741 667 SMART c3hfinal6 293 316 IPR000571 GO:0046872
Cma02g00741 667 Pfam Ankyrin repeats (3 copies) 56 127 IPR002110 GO:0005515
Cma02g00741 667 Gene3D - 23 157 IPR036770 -
Cma02g00741 667 PANTHER UNKEMPT FAMILY MEMBER 12 665 IPR045234 -
Cma02g00741 667 MobiDBLite consensus disorder prediction 430 455 - -
Cma02g00741 667 ProSiteProfiles Zinc finger C3H1-type profile. 263 285 IPR000571 GO:0046872
Cma02g00741 667 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Cma02g00741 667 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 12 665 - -
Cma02g00741 667 SMART ANK_2a 93 125 IPR002110 GO:0005515
Cma02g00741 667 SMART ANK_2a 58 88 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00741 Cma20g00342 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00741 Cma-Chr2:4498059 Cma14g00450 Cma-Chr14:2142180 2.09E-163 dispersed
Cma02g00741 Cma-Chr2:4498059 Cma20g00342 Cma-Chr20:1682067 0 wgd
Cma02g00741 Cma-Chr2:4498059 Cma04g00150 Cma-Chr4:731055 0 wgd
Cma02g00741 Cma-Chr2:4498059 Cma04g01112 Cma-Chr4:5737546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34471 PF12796 Ank_2 2.40E-08 CL0465 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00741 - - csv:101213761 1018.07