Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00755 ATGGCGCCAACAGCCACCGGATCCTTCTGCAACAAATTCCTTGCCCTTTTACTTCTAATTCTCCACGTCGGCTGCTTTCTTTTAAACAACGGTGACAATCGCCACCGCCGCCACCGTCCCCTGCAGCCGAAGAAGCGTAATGAATCCCCTCCGACGCCGTTGAGTCTGAAGCCGCAAAAAGCCCTAACCTCATCCATTTCATTTCTCAAACGAATCTTTTCTTCCAAAACGTGCAAAATGGCAATCGAGACGACTCGTCCCTCGACTCCGGCTCGATCGTCGCAGCATTCGATCGTCACATTTATTCCTCAGCCGGTGGATACTCCGAACTCCAAGAACACTAATCCGATCGATTCTGCTGGAACGCCACAGGATTCCGATATCACTACGGCGGAGATCAACCAATTCTTCCCCCTTCGTAACGATATCTTCCCCTGCACCGCTTGCGGCGAGATTTTTCCCAAGCCTCAATTGCTCGAACAGCACCAAGCGGCTAAACACGCCGTGTCGGAGCTTGCAGATTCGGATTCCGGTAAGAATATTGTTCGGATCATTTTCGAAACCGGATGGACGAGTAGAGAAGTAAGCCCGAAGATCCTCCGAATCTTGAAAATCCACAACAGTCAAAAGATTCTCTCCAGATTCGAGGAATATAGAGAGTCGGTGAAGGCTAAAGCGGCCCGAAACGGCGGCGCTGTAAAGCGATGGGACGAACGGTGCATCGCCGATGGGAACGAGCTTCTGAGATTTCACTGTTCGACGTTTTTGTGCGATTTGGGGCAAAACGGTAATTCCAGCATCTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATCAAATCTGGATTCTCACACAAGTTGGATGGAATTTCTACGCTATCAAGTAGCTGGAGAGCACACGTGGCAATCCCTGAGGACATCGAAGAGGAGTTCAAGTTCATGAACGTGAAACGGGCGATTCTAGTTTGCCGGGTCGTGGCCGGCCGGATCGGGTCCGACAACGACGAGCCGGAGAAAGATGGCGGCGGGTTTGACTCCGTAGTCGGCCGAAGTGGGAGTGGGGCCCAGACGACGGTGGATGAAGAAGAGCTGCTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATTGTGTACGAAGTCTGA 1149 51.96 MAPTATGSFCNKFLALLLLILHVGCFLLNNGDNRHRRHRPLQPKKRNESPPTPLSLKPQKALTSSISFLKRIFSSKTCKMAIETTRPSTPARSSQHSIVTFIPQPVDTPNSKNTNPIDSAGTPQDSDITTAEINQFFPLRNDIFPCTACGEIFPKPQLLEQHQAAKHAVSELADSDSGKNIVRIIFETGWTSREVSPKILRILKIHNSQKILSRFEEYRESVKAKAARNGGAVKRWDERCIADGNELLRFHCSTFLCDLGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFMNVKRAILVCRVVAGRIGSDNDEPEKDGGGFDSVVGRSGSGAQTTVDEEELLVFNPRAVLPCFAIVYEV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4569350 4570498 - CmaCh02G007550.1 Cma02g00755 288506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00755 382 MobiDBLite consensus disorder prediction 334 354 - -
Cma02g00755 382 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 380 - -
Cma02g00755 382 ProSitePatterns Zinc finger C2H2 type domain signature. 146 167 IPR013087 -
Cma02g00755 382 Gene3D - 189 382 - -
Cma02g00755 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 172 IPR013087 -
Cma02g00755 382 MobiDBLite consensus disorder prediction 32 60 - -
Cma02g00755 382 SUPERFAMILY ADP-ribosylation 170 381 - -
Cma02g00755 382 PANTHER NUCLEIC ACID BINDING PROTEIN 5 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00755 Cma-Chr2:4569350 Cma04g02340 Cma-Chr4:16266503 5.70E-64 dispersed
Cma02g00755 Cma-Chr2:4569350 Cma20g00355 Cma-Chr20:1740357 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34472 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00755 - - csv:101205506 583.948