Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00806 ATGGGCCGGGCCTTGCTGTTGAATGGAGCAAGTCCACTCGTATCGATGAAAGCACTACAAAACAGCCTGAGTGCAGCTCGGATCACAGCCACTTTCTTTCTCACCTTATTAGCGCTTTCGTTAATCTTTCCGATGGCAGAAGGAGAGGATATCCAGCCACTCGTCTGTGACAACGGAACTGGAATGGTTAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTTGGTATGGGCCAAAAGGATGCGTATGTTGGGGATGAGGCTCAGTCCAAACGAGGTATATTGACTTTGAAATATCCTATAGAGCATGGTATCGTGAGCAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTACTCACTGAAGCCCCTCTGAATCCTAAGGCAAATCGTGAAAAAATGACCCAAATCATGTTCGAGACCTTCAACGCTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCGCTCTATGCTAGTGGACGCACAACTGGTATTGTTATGGATTCTGGTGATGGTGTCAGTCATACTGTCCCAATTTATGAGGGATATGCTCTCCCCCATGCCATTCTTCGTCTCGACCTTGCTGGCCGTGATCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTACTCCTTCACCACCTCAGCAGAGCGCGAAATTGTGAGAGATGTGAAGGAAAAACTAGCATACATTGCCCTCGATTACGAGCAAGAACTTGAAACTTCCAAAACTGGTTCATCTGTTGAGAAGAGTTATGAACTTCCAGATGGGCAGATTATCACAATCGGTGCAGAACGTTTCCGATGCCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAAACAACCTATAACTCCATCATGAAATGCGACGTTGATATCAGAAAGGATCTGTATGGAAACATTGTTCTTAGTGGAGGAACAACCATGTTCCCAGGCATTGCTGATCGAATGAGCAAAGAAATAACTGCATTAGCCCCAAGCAGCATGAAAATTAAGGTGGTAGCTCCTCCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTCTAGCCTCACTCAGCACGTTTCAGCAGATGTGGATTGCAAAGGCCGAGTATGATGAGTCTGGCCCATCCATTGTGCACAGGAAATGCTTCTGA 1266 46.92 MGRALLLNGASPLVSMKALQNSLSAARITATFFLTLLALSLIFPMAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTGSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4772408 4774900 - CmaCh02G008060.1 Cma02g00806 288557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00806 421 ProSitePatterns Actins and actin-related proteins signature. 150 162 IPR020902 -
Cma02g00806 421 Gene3D Actin; Chain A, domain 4 226 317 - -
Cma02g00806 421 Gene3D - 54 415 - -
Cma02g00806 421 PANTHER ACTIN 3 45 420 - -
Cma02g00806 421 ProSitePatterns Actins signature 1. 99 109 IPR004001 -
Cma02g00806 421 SUPERFAMILY Actin-like ATPase domain 50 198 IPR043129 -
Cma02g00806 421 PRINTS Actin signature 161 174 IPR004000 -
Cma02g00806 421 PRINTS Actin signature 72 81 IPR004000 -
Cma02g00806 421 PRINTS Actin signature 95 106 IPR004000 -
Cma02g00806 421 PRINTS Actin signature 186 205 IPR004000 -
Cma02g00806 421 PRINTS Actin signature 282 298 IPR004000 -
Cma02g00806 421 PRINTS Actin signature 107 129 IPR004000 -
Cma02g00806 421 PANTHER ACTIN 45 420 IPR004000 -
Cma02g00806 421 SMART actin_3 51 421 IPR004000 -
Cma02g00806 421 Gene3D - 184 384 - -
Cma02g00806 421 Pfam Actin 49 421 IPR004000 -
Cma02g00806 421 SUPERFAMILY Actin-like ATPase domain 193 421 IPR043129 -
Cma02g00806 421 CDD NBD_sugar-kinase_HSP70_actin 54 227 - -
Cma02g00806 421 ProSitePatterns Actins signature 2. 402 410 IPR004001 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00806 Cma20g00406 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00806 Cma-Chr2:4772408 Cma14g00415 Cma-Chr14:1949873 0 dispersed
Cma08g00523 Cma-Chr8:3018462 Cma02g00806 Cma-Chr2:4772408 1.29E-66 dispersed
Cma17g00960 Cma-Chr17:7133525 Cma02g00806 Cma-Chr2:4772408 5.61E-67 dispersed
Cma18g00730 Cma-Chr18:6592489 Cma02g00806 Cma-Chr2:4772408 1.90E-73 dispersed
Cma10g00243 Cma-Chr10:1077552 Cma02g00806 Cma-Chr2:4772408 4.58E-88 transposed
Cma02g00806 Cma-Chr2:4772408 Cma20g00406 Cma-Chr20:1944722 0 wgd
Cma02g00806 Cma-Chr2:4772408 Cma03g00427 Cma-Chr3:4537903 0 wgd
Cma02g00806 Cma-Chr2:4772408 Cma07g00992 Cma-Chr7:5110022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00806 K10355 - han:110894935 750.74