Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00806 | ATGGGCCGGGCCTTGCTGTTGAATGGAGCAAGTCCACTCGTATCGATGAAAGCACTACAAAACAGCCTGAGTGCAGCTCGGATCACAGCCACTTTCTTTCTCACCTTATTAGCGCTTTCGTTAATCTTTCCGATGGCAGAAGGAGAGGATATCCAGCCACTCGTCTGTGACAACGGAACTGGAATGGTTAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTTGGTATGGGCCAAAAGGATGCGTATGTTGGGGATGAGGCTCAGTCCAAACGAGGTATATTGACTTTGAAATATCCTATAGAGCATGGTATCGTGAGCAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTACTCACTGAAGCCCCTCTGAATCCTAAGGCAAATCGTGAAAAAATGACCCAAATCATGTTCGAGACCTTCAACGCTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCGCTCTATGCTAGTGGACGCACAACTGGTATTGTTATGGATTCTGGTGATGGTGTCAGTCATACTGTCCCAATTTATGAGGGATATGCTCTCCCCCATGCCATTCTTCGTCTCGACCTTGCTGGCCGTGATCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTACTCCTTCACCACCTCAGCAGAGCGCGAAATTGTGAGAGATGTGAAGGAAAAACTAGCATACATTGCCCTCGATTACGAGCAAGAACTTGAAACTTCCAAAACTGGTTCATCTGTTGAGAAGAGTTATGAACTTCCAGATGGGCAGATTATCACAATCGGTGCAGAACGTTTCCGATGCCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAAACAACCTATAACTCCATCATGAAATGCGACGTTGATATCAGAAAGGATCTGTATGGAAACATTGTTCTTAGTGGAGGAACAACCATGTTCCCAGGCATTGCTGATCGAATGAGCAAAGAAATAACTGCATTAGCCCCAAGCAGCATGAAAATTAAGGTGGTAGCTCCTCCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTCTAGCCTCACTCAGCACGTTTCAGCAGATGTGGATTGCAAAGGCCGAGTATGATGAGTCTGGCCCATCCATTGTGCACAGGAAATGCTTCTGA | 1266 | 46.92 | MGRALLLNGASPLVSMKALQNSLSAARITATFFLTLLALSLIFPMAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTGSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4772408 | 4774900 | - | CmaCh02G008060.1 | Cma02g00806 | 288557 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00806 | 421 | ProSitePatterns | Actins and actin-related proteins signature. | 150 | 162 | IPR020902 | - | |
Cma02g00806 | 421 | Gene3D | Actin; Chain A, domain 4 | 226 | 317 | - | - | |
Cma02g00806 | 421 | Gene3D | - | 54 | 415 | - | - | |
Cma02g00806 | 421 | PANTHER | ACTIN 3 | 45 | 420 | - | - | |
Cma02g00806 | 421 | ProSitePatterns | Actins signature 1. | 99 | 109 | IPR004001 | - | |
Cma02g00806 | 421 | SUPERFAMILY | Actin-like ATPase domain | 50 | 198 | IPR043129 | - | |
Cma02g00806 | 421 | PRINTS | Actin signature | 161 | 174 | IPR004000 | - | |
Cma02g00806 | 421 | PRINTS | Actin signature | 72 | 81 | IPR004000 | - | |
Cma02g00806 | 421 | PRINTS | Actin signature | 95 | 106 | IPR004000 | - | |
Cma02g00806 | 421 | PRINTS | Actin signature | 186 | 205 | IPR004000 | - | |
Cma02g00806 | 421 | PRINTS | Actin signature | 282 | 298 | IPR004000 | - | |
Cma02g00806 | 421 | PRINTS | Actin signature | 107 | 129 | IPR004000 | - | |
Cma02g00806 | 421 | PANTHER | ACTIN | 45 | 420 | IPR004000 | - | |
Cma02g00806 | 421 | SMART | actin_3 | 51 | 421 | IPR004000 | - | |
Cma02g00806 | 421 | Gene3D | - | 184 | 384 | - | - | |
Cma02g00806 | 421 | Pfam | Actin | 49 | 421 | IPR004000 | - | |
Cma02g00806 | 421 | SUPERFAMILY | Actin-like ATPase domain | 193 | 421 | IPR043129 | - | |
Cma02g00806 | 421 | CDD | NBD_sugar-kinase_HSP70_actin | 54 | 227 | - | - | |
Cma02g00806 | 421 | ProSitePatterns | Actins signature 2. | 402 | 410 | IPR004001 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00806 | Cma20g00406 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00806 | Cma-Chr2:4772408 | Cma14g00415 | Cma-Chr14:1949873 | 0 | dispersed | |
Cma08g00523 | Cma-Chr8:3018462 | Cma02g00806 | Cma-Chr2:4772408 | 1.29E-66 | dispersed | |
Cma17g00960 | Cma-Chr17:7133525 | Cma02g00806 | Cma-Chr2:4772408 | 5.61E-67 | dispersed | |
Cma18g00730 | Cma-Chr18:6592489 | Cma02g00806 | Cma-Chr2:4772408 | 1.90E-73 | dispersed | |
Cma10g00243 | Cma-Chr10:1077552 | Cma02g00806 | Cma-Chr2:4772408 | 4.58E-88 | transposed | |
Cma02g00806 | Cma-Chr2:4772408 | Cma20g00406 | Cma-Chr20:1944722 | 0 | wgd | |
Cma02g00806 | Cma-Chr2:4772408 | Cma03g00427 | Cma-Chr3:4537903 | 0 | wgd | |
Cma02g00806 | Cma-Chr2:4772408 | Cma07g00992 | Cma-Chr7:5110022 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00806 | K10355 | - | han:110894935 | 750.74 |