Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00812 ATGGCTCATTCTTCTCTTCCAATCTTCTTAGATCCGCCAAATTGGTCACCGTCAAATCAACCACAAGGAAATGATCAGCATCAACTTCCGGCGTTCATGCTACCGCCTCAGCCTACGGAGGCTCGGGGCAACAGAGCCCGACCGGGTTCTATGGCGTACCGAGCACGGCTGGCGATGGTACCACAGCCGGAGATGGCACTAAAATGCCCACGTTGTGATTCTACAAACACCAAATTCTGTTATTTCAATAATTACAGCCTTACTCAGCCGAGACACTTTTGTAAAACCTGCCGGCGGTACTGGACCCGCGGCGGCGCTCTTAGAAATGTGCCCGTCGGTGGAGGGTTTCGTAAGAACAAGAAGAAGAAGAAATCTAACCGATCTAAGTCTCCAATTGCTACTCAAATTGAAATGGGAAATTCAAGAACAATTGAGAGCCATTTCCCATCACAATCTTTTCAATTACCTTCAATTCCATCTCTCTCTCGTTTTGGAGCAAACAACTCAGCCCTAAACTTCTCTGGAATTCACATCGGAAACACAAATTCCGGCAGGGAACCGGAGCAATGGCAGCGTTCTCAGCAACAACTGCCGTTCATCATCGCCGGACTCGAACCACCGACTCTCGCCGCTGCATACCCACAAAACCTTCAAACCGAAGTCGACAACTTTGGTTTCCACCAACAACTTCAGAATTCGACGCCCTTTTCAAGGATTCCGATGAAAAACAAAGAACAAGAACAAGGAATTTTATCGAACTTCTTACGACCAGCGGATCAAAACAGCCACTTTTGGGGATGTGATCATCAAAATTCATGGACGGATTTATCAGCTATCAGTTCATCTTCAAGCAGCCATCTTTTGTAA 867 46.83 MAHSSLPIFLDPPNWSPSNQPQGNDQHQLPAFMLPPQPTEARGNRARPGSMAYRARLAMVPQPEMALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRKNKKKKKSNRSKSPIATQIEMGNSRTIESHFPSQSFQLPSIPSLSRFGANNSALNFSGIHIGNTNSGREPEQWQRSQQQLPFIIAGLEPPTLAAAYPQNLQTEVDNFGFHQQLQNSTPFSRIPMKNKEQEQGILSNFLRPADQNSHFWGCDHQNSWTDLSAISSSSSSHLL 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4795103 4796506 - CmaCh02G008120.1 Cma02g00812 288563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00812 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 284 IPR045174 GO:0003700|GO:0006355
Cma02g00812 288 MobiDBLite consensus disorder prediction 10 47 - -
Cma02g00812 288 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Cma02g00812 288 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 26 284 - -
Cma02g00812 288 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Cma02g00812 288 MobiDBLite consensus disorder prediction 112 131 - -
Cma02g00812 288 Pfam Dof domain, zinc finger 66 121 IPR003851 GO:0003677|GO:0006355
Cma02g00812 288 MobiDBLite consensus disorder prediction 11 27 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00595 Cma02g00812 CCT
Cma02g00812 Cma13g00133 CCT
Cma02g00812 Cma13g00133 ECH
Cma01g00595 Cma02g00812 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00812 Cma-Chr2:4795103 Cma04g02639 Cma-Chr4:17995394 1.80E-51 dispersed
Cma01g00595 Cma-Chr1:3123663 Cma02g00812 Cma-Chr2:4795103 3.64E-47 wgd
Cma13g00133 Cma-Chr13:909757 Cma02g00812 Cma-Chr2:4795103 1.07E-47 wgd
Cma14g00157 Cma-Chr14:642222 Cma02g00812 Cma-Chr2:4795103 5.91E-44 wgd
Cma02g00812 Cma-Chr2:4795103 Cma20g00412 Cma-Chr20:1971141 2.05E-107 wgd
Cma02g00812 Cma-Chr2:4795103 Cma04g00219 Cma-Chr4:1060358 1.52E-48 wgd
Cma02g00812 Cma-Chr2:4795103 Cma04g01188 Cma-Chr4:6067895 6.18E-53 wgd
Cma02g00812 Cma-Chr2:4795103 Cma06g00304 Cma-Chr6:1443954 4.76E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34476 PF02701 zf-Dof 1.30E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00812 - - cpep:111794468 535.413