Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00853 ATGGAGCCGTTGGAAAAACCGGTGCCGAAGTCGTCGCCTCTCGCGCCATTTCCACGGGACTCAAGAGGATCGCTCGAGGTTTTTAATCCCTCCGCCACTTATACGTCACGATCCATCAATTCCATTTCACGGCCGAACTCGACGTGGTCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCGACTAGACTCACCGCCGTTCCGACGAGTAAGACCGGCGAGGATATCACGTCATGGATGGCCTTCAAGGATTCGAATGCTTCACCACAATCCAACTCGCCACAAGCTCAGAAGACTATTTCGGCGATTCTCAGCGACAAATCGCCGCCGAAATCAGCGGAAGAAGTGGACTCTGCCGCCTTACGTGCTGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAAACTGGAAAACCGCAGGGCGTTGGAGTTCGAACTTCCGGCGGCGATGAACCGATTAACAAACTGGAGAATTCGAGAAGAACTTCGAATAACTCGGGGCGGAGTTCGGGCGACATGTCGGACGATGTTGGAAGAGAAAGAGGGTTTCCGAGAGTCTCTGAGGATTTGAAAGACGCTCTGTCGACATTTCAGCAAACATTTGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGTGCTGGATTCTTCAAGATGACTGGCTATACATCCAAGGAAGTTATCGGAAGAAATTGTCGATTTTTGCAGGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATTCGAGAGGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCGTTTTGGAATTTGCTTACTATTTCACCTATCAAAGATGATGACGGCAAGGTTCTCAAATTTATTGGAATGCAAGTAGAGGTGAGCAAACACACAGAGGGATTCAAAGATAAGATGGTTCGTCCTAATGGCTTGCCAGAATCGTTGATTCGTTATGATGCCCGTCAAAAAGATATGGCTACCAGTTCGGTAACGGAGCTTGTGCATGCGGTGAAAATGCCTGGGTCTGTGTCTGTAAGTGAATCTAGGCCACGGGCTCTAAGTGAATCTATGAACCGCCGGTCAGTAAGAAAATCCGGCGGCGGAGATGAGGCATATAGACATGAAGCTGCTATGGTTAGGCGAAAGTCAGAGAGTACAGCAGCTTCAACTGGACGACGTAGAAGGTCGATGCAGCGTATCAATGAGCTGCCGGAGACGAAACCCAAGAAGTATAGCCGTCGTTCATTTATGGGCATTGTGAGGAAAAGTGAATCAAATACTGAAAGCTTCAACATTGAAAATTGTTCGGACGATGATAATGAGAGCGATGATGATGAGAGACCAGATAGCGTAGACGACAAAGTAAGACAAAAGGAAATGAGGAAGGGTATTGATTTAGCGACCACCCTCGAACGTATAGAGAAGAACTTCGTCATCACTGATCCGAGGCTGCCCGACAATCCCATTATATTTGCTTCTGATAGCTTCCTGGAGCTGACTGAGTACTGTAGAGAAGAAATCTTGGGAAGAAATTGCAGGTTCCTGCAAGGTCCTGAAACCGATCGAGCAACTGTCAAGAAAATAAGAGATGCAATTGACAACCAAACTGAAGTTACAGTGCAGCTTATTAACTACACCAAAACTGGTAAGAAGTTTTGGAATCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTCCAGTATTTTATTGGAGTACAACTTGACGGGAGTCAGCACGTCGAACCGCTAAGCAATTGCATATCGGAAACTACTGCAAAAGAGGGCGAAAAATTGGTAAAAGAAACTGCTGAAAATGTTGATACGGCGGCTAGAGAACTTCCCGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAATGTGGTCCAACCAAAACCTCACAGAAAGGATAGTGCTTCTTGGAAAGCTTTCCAGAAGATTTTAGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCGGTTAAACCTTTGGGATCAGGTGATACTGGCAGTGTGCATTTAGTAGAACTGTGTGGGACTGATCAGTGTTTTGCCATGAAGGCAATGGACAAGGGTGTTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCGCCGAGAGGGAAATACTCGACAAGTTGGATCATCCTTTTCTTCCTGCGTTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGAGAGACAACCTACAAAGGTTTTAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTCTCATTGCATTAGAGTATCTTCATTGTCAAGGGATAATTTACAGAGATCTGAAGCCTGAGAACGTTCTACTCCAGGGAGACGGACACGTGACGTTGACGGATTTTGACTTGTCATGTTTGACTGCTTCCAAACCTCAGCTTTTGTTTCCAACGATGAATGAGAAGAAAAAACAATCAAGATCTCAACAGGCTCCGATCTTTATGGCCGAACCTATGCGAGCATCGAACTCATTCGTCGGCACTGAAGAGTACATAGCACCGGAAATTATCACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTGTCCTCCTATATGAGATGCTCTATGGATACACACCCTTTAGGGGGAAGACAAGGCAAAAGACTTTTGCCAACGTTCTTCATAAGGATCTTAAATTTCCCAGAAGTATATCGGCTAGTCTCAATGCAAAGCAATTAATCTTCAGGTTATTGCAAAGAGATCCCAAAACTCGATTGGGTTCTCGAGAAGGAGCTAATGAAATCAAACGACATCCGTTCTTCCGAGGCATCAATTGGGCGCTCGTTCGTTGCATGAAACCTCCCGAGCTCGAAGCTCCTCTCTTCCCGACCACCGATGCCGAAAAAGAAGGTAATAAGGCATCAGATTTTGATGGAAAAGATGTTGAACTCAGTGTTTTCTGA 3021 45.95 MEPLEKPVPKSSPLAPFPRDSRGSLEVFNPSATYTSRSINSISRPNSTWSNWVEPRSSAESDSTRLTAVPTSKTGEDITSWMAFKDSNASPQSNSPQAQKTISAILSDKSPPKSAEEVDSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPINKLENSRRTSNNSGRSSGDMSDDVGRERGFPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVTELVHAVKMPGSVSVSESRPRALSESMNRRSVRKSGGGDEAYRHEAAMVRRKSESTAASTGRRRRSMQRINELPETKPKKYSRRSFMGIVRKSESNTESFNIENCSDDDNESDDDERPDSVDDKVRQKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYCREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCISETTAKEGEKLVKETAENVDTAARELPDANLTPEDLWANHSNVVQPKPHRKDSASWKAFQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQCFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLERQPTKVLKEDAVRFYAAEVLIALEYLHCQGIIYRDLKPENVLLQGDGHVTLTDFDLSCLTASKPQLLFPTMNEKKKQSRSQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGVLLYEMLYGYTPFRGKTRQKTFANVLHKDLKFPRSISASLNAKQLIFRLLQRDPKTRLGSREGANEIKRHPFFRGINWALVRCMKPPELEAPLFPTTDAEKEGNKASDFDGKDVELSVF 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4972923 4982850 - CmaCh02G008530.1 Cma02g00853 288604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00853 1006 MobiDBLite consensus disorder prediction 351 464 - -
Cma02g00853 1006 SMART pas_2 474 543 IPR000014 -
Cma02g00853 1006 SMART pas_2 190 259 IPR000014 -
Cma02g00853 1006 ProSiteProfiles PAS repeat profile. 188 259 IPR000014 -
Cma02g00853 1006 MobiDBLite consensus disorder prediction 160 174 - -
Cma02g00853 1006 MobiDBLite consensus disorder prediction 1 77 - -
Cma02g00853 1006 ProSiteProfiles Protein kinase domain profile. 673 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00853 1006 MobiDBLite consensus disorder prediction 429 443 - -
Cma02g00853 1006 CDD PAS 487 587 IPR000014 -
Cma02g00853 1006 TIGRFAM sensory_box: PAS domain S-box protein 497 587 IPR000014 -
Cma02g00853 1006 TIGRFAM sensory_box: PAS domain S-box protein 215 307 IPR000014 -
Cma02g00853 1006 PANTHER PHOTOTROPIN-1 136 1006 - -
Cma02g00853 1006 MobiDBLite consensus disorder prediction 363 422 - -
Cma02g00853 1006 Pfam PAS domain 495 587 IPR000014 -
Cma02g00853 1006 Pfam PAS domain 209 305 IPR000014 -
Cma02g00853 1006 MobiDBLite consensus disorder prediction 980 1006 - -
Cma02g00853 1006 Gene3D PAS domain 202 362 - -
Cma02g00853 1006 SUPERFAMILY PYP-like sensor domain (PAS domain) 209 301 IPR035965 -
Cma02g00853 1006 Gene3D Transferase(Phosphotransferase) domain 1 757 983 - -
Cma02g00853 1006 Gene3D PAS domain 460 625 - -
Cma02g00853 1006 Gene3D Phosphorylase Kinase; domain 1 672 985 - -
Cma02g00853 1006 ProSitePatterns Protein kinases ATP-binding region signature. 679 702 IPR017441 GO:0005524
Cma02g00853 1006 CDD STKc_phototropin_like 671 979 - -
Cma02g00853 1006 PANTHER FLIPPASE KINASE 1-RELATED 136 1006 - -
Cma02g00853 1006 Pfam Protein kinase domain 675 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00853 1006 MobiDBLite consensus disorder prediction 134 183 - -
Cma02g00853 1006 CDD PAS 215 304 IPR000014 -
Cma02g00853 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Cma02g00853 1006 SUPERFAMILY Protein kinase-like (PK-like) 652 981 IPR011009 -
Cma02g00853 1006 ProSiteProfiles PAC domain profile. 262 316 IPR000700 -
Cma02g00853 1006 SMART serkin_6 673 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00853 1006 SUPERFAMILY PYP-like sensor domain (PAS domain) 488 587 IPR035965 -
Cma02g00853 1006 MobiDBLite consensus disorder prediction 83 102 - -
Cma02g00853 1006 SMART pac_2 265 307 IPR001610 -
Cma02g00853 1006 SMART pac_2 549 591 IPR001610 -
Cma02g00853 1006 ProSiteProfiles PAS repeat profile. 476 545 IPR000014 -
Cma02g00853 1006 ProSiteProfiles PAC domain profile. 546 600 IPR000700 -
Cma02g00853 1006 MobiDBLite consensus disorder prediction 26 77 - -
Cma02g00853 1006 MobiDBLite consensus disorder prediction 444 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00309 Cma-Chr2:1464696 Cma02g00853 Cma-Chr2:4972923 0 dispersed
Cma02g00853 Cma-Chr2:4972923 Cma20g00692 Cma-Chr20:3167759 0 dispersed
Cma12g00887 Cma-Chr12:6721676 Cma02g00853 Cma-Chr2:4972923 2.93E-15 dispersed
Cma20g00071 Cma-Chr20:311465 Cma02g00853 Cma-Chr2:4972923 1.09E-74 dispersed
Cma02g00853 Cma-Chr2:4972923 Cma20g00451 Cma-Chr20:2135318 1.76E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68348 PF00069 Pkinase 1.10E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00853 K20715 - csv:101214662 1738.39