Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00857 | ATGTTTGATCTTAATCTCAATGTCGACTCGGTTGATGCGACTCATAAGGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCATGTGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCTAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCTGGTGGCGAGCTCTTCACGCTCAACTTCGAAATATTGAAGGCTGGAAGCACGAACGATATGGTCACTAAGGAGTTTTTTCCGTTAGGTGGAGCGGTGAATGCTGAATTCGGGATTCCTCAGGGGCATAAATCGGCCTCTTCTTCGTCATCTTCTTCGAGGAAGAACTGGATCGACCTTGCGTGCAATCGAAGCAGTTCAGCAGGGGAGGGGAGAACGGTTCAGCCAGTTCAGCCTCAGCCGGTGAAAAAGAGCAGGAGGGGTCCAAGGTCTCGTAGTTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACGGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGGGGGGTAGACGCTGATATTAATTTCAATGTTAGCGATTATGAGGAAGACCTGAAACTGATGGAGAACTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTAACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAGGTCGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGAGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGGGAGTTTCTGAGGGCAGCAGTGAAGGTGGTCGGAGTATGCTTGATTTGAATTTAGGGATTTCACCCCCTTCCAACTGTCCAAACGAGGATGATGGGCATCTGCGATTCCAATCTGGTCCTTGCTTTCCTAATGATAGGAGCACAAAGATGGAGAGCAATGCCCGTGCAGCAGTTGGCGATCCACCTGTGAATGGACTGGCAATGACATCAGAGCATGCTCCCTTATGGAACGGTACACAATCTAGCTTCTTCCCCAGTGAGGAAAGCATGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCCCTAACTGGGCATGGCAAATCCATGGCCCGATTAATGCCGCCCAAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATGCCTCCACCTCACCAACCGAGCTCGATCGCCCAAAATATCCATTTCAATTCTGCCAAAGCCTCCCTCAACCCCCCCCAGTATCACCACCTGTTGAACCAACAACATGCACCGCCATAA | 1479 | 50.37 | MFDLNLNVDSVDATHKEDSVVFFEKLPQGSGNHVDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTLNFEILKAGSTNDMVTKEFFPLGGAVNAEFGIPQGHKSASSSSSSSRKNWIDLACNRSSSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNVSDYEEDLKLMENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEGVSEGSSEGGRSMLDLNLGISPPSNCPNEDDGHLRFQSGPCFPNDRSTKMESNARAAVGDPPVNGLAMTSEHAPLWNGTQSSFFPSEESMTEKRLALGSSQGVPNWAWQIHGPINAAQMPLFSTAASSGFSFSATHFPAAMPPPHQPSSIAQNIHFNSAKASLNPPQYHHLLNQQHAPP | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5007350 | 5010705 | - | CmaCh02G008570.1 | Cma02g00857 | 288608 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00857 | 492 | MobiDBLite | consensus disorder prediction | 32 | 58 | - | - | |
Cma02g00857 | 492 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | Pfam | AP2 domain | 248 | 298 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | MobiDBLite | consensus disorder prediction | 128 | 142 | - | - | |
Cma02g00857 | 492 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | Gene3D | AP2/ERF domain | 156 | 215 | IPR036955 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | CDD | AP2 | 157 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | SUPERFAMILY | DNA-binding domain | 156 | 215 | IPR016177 | GO:0003677 | |
Cma02g00857 | 492 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 460 | - | - | |
Cma02g00857 | 492 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 460 | - | - | |
Cma02g00857 | 492 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g00857 | 492 | MobiDBLite | consensus disorder prediction | 128 | 158 | - | - | |
Cma02g00857 | 492 | MobiDBLite | consensus disorder prediction | 27 | 59 | - | - | |
Cma02g00857 | 492 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00857 | Cma-Chr2:5007350 | Cma07g00694 | Cma-Chr7:3053919 | 1.01E-94 | dispersed | |
Cma14g00185 | Cma-Chr14:775692 | Cma02g00857 | Cma-Chr2:5007350 | 5.42E-119 | wgd | |
Cma02g00857 | Cma-Chr2:5007350 | Cma20g00457 | Cma-Chr20:2186182 | 0 | wgd | |
Cma02g00857 | Cma-Chr2:5007350 | Cma04g00262 | Cma-Chr4:1293232 | 1.38E-61 | wgd | |
Cma02g00857 | Cma-Chr2:5007350 | Cma04g01236 | Cma-Chr4:6333575 | 1.84E-64 | wgd | |
Cma02g00857 | Cma-Chr2:5007350 | Cma06g00347 | Cma-Chr6:1612143 | 1.89E-87 | wgd | |
Cma02g00857 | Cma-Chr2:5007350 | Cma07g00939 | Cma-Chr7:4516453 | 3.86E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34480 | PF00847 | AP2 | 3.10E-09 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00857 | K09284 | - | csv:101222024 | 807.364 |