Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00857 ATGTTTGATCTTAATCTCAATGTCGACTCGGTTGATGCGACTCATAAGGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCATGTGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCTAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCTGGTGGCGAGCTCTTCACGCTCAACTTCGAAATATTGAAGGCTGGAAGCACGAACGATATGGTCACTAAGGAGTTTTTTCCGTTAGGTGGAGCGGTGAATGCTGAATTCGGGATTCCTCAGGGGCATAAATCGGCCTCTTCTTCGTCATCTTCTTCGAGGAAGAACTGGATCGACCTTGCGTGCAATCGAAGCAGTTCAGCAGGGGAGGGGAGAACGGTTCAGCCAGTTCAGCCTCAGCCGGTGAAAAAGAGCAGGAGGGGTCCAAGGTCTCGTAGTTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACGGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGGGGGGTAGACGCTGATATTAATTTCAATGTTAGCGATTATGAGGAAGACCTGAAACTGATGGAGAACTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTAACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAGGTCGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGAGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGGGAGTTTCTGAGGGCAGCAGTGAAGGTGGTCGGAGTATGCTTGATTTGAATTTAGGGATTTCACCCCCTTCCAACTGTCCAAACGAGGATGATGGGCATCTGCGATTCCAATCTGGTCCTTGCTTTCCTAATGATAGGAGCACAAAGATGGAGAGCAATGCCCGTGCAGCAGTTGGCGATCCACCTGTGAATGGACTGGCAATGACATCAGAGCATGCTCCCTTATGGAACGGTACACAATCTAGCTTCTTCCCCAGTGAGGAAAGCATGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCCCTAACTGGGCATGGCAAATCCATGGCCCGATTAATGCCGCCCAAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATGCCTCCACCTCACCAACCGAGCTCGATCGCCCAAAATATCCATTTCAATTCTGCCAAAGCCTCCCTCAACCCCCCCCAGTATCACCACCTGTTGAACCAACAACATGCACCGCCATAA 1479 50.37 MFDLNLNVDSVDATHKEDSVVFFEKLPQGSGNHVDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTLNFEILKAGSTNDMVTKEFFPLGGAVNAEFGIPQGHKSASSSSSSSRKNWIDLACNRSSSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNVSDYEEDLKLMENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEGVSEGSSEGGRSMLDLNLGISPPSNCPNEDDGHLRFQSGPCFPNDRSTKMESNARAAVGDPPVNGLAMTSEHAPLWNGTQSSFFPSEESMTEKRLALGSSQGVPNWAWQIHGPINAAQMPLFSTAASSGFSFSATHFPAAMPPPHQPSSIAQNIHFNSAKASLNPPQYHHLLNQQHAPP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5007350 5010705 - CmaCh02G008570.1 Cma02g00857 288608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00857 492 MobiDBLite consensus disorder prediction 32 58 - -
Cma02g00857 492 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 MobiDBLite consensus disorder prediction 128 142 - -
Cma02g00857 492 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Cma02g00857 492 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Cma02g00857 492 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 SUPERFAMILY DNA-binding domain 156 215 IPR016177 GO:0003677
Cma02g00857 492 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 460 - -
Cma02g00857 492 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 460 - -
Cma02g00857 492 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Cma02g00857 492 MobiDBLite consensus disorder prediction 128 158 - -
Cma02g00857 492 MobiDBLite consensus disorder prediction 27 59 - -
Cma02g00857 492 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00857 Cma-Chr2:5007350 Cma07g00694 Cma-Chr7:3053919 1.01E-94 dispersed
Cma14g00185 Cma-Chr14:775692 Cma02g00857 Cma-Chr2:5007350 5.42E-119 wgd
Cma02g00857 Cma-Chr2:5007350 Cma20g00457 Cma-Chr20:2186182 0 wgd
Cma02g00857 Cma-Chr2:5007350 Cma04g00262 Cma-Chr4:1293232 1.38E-61 wgd
Cma02g00857 Cma-Chr2:5007350 Cma04g01236 Cma-Chr4:6333575 1.84E-64 wgd
Cma02g00857 Cma-Chr2:5007350 Cma06g00347 Cma-Chr6:1612143 1.89E-87 wgd
Cma02g00857 Cma-Chr2:5007350 Cma07g00939 Cma-Chr7:4516453 3.86E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34480 PF00847 AP2 3.10E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00857 K09284 - csv:101222024 807.364