Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00866 ATGGATCATTCAAGCGGCCAACAAGAAGCTCAAGCCCAACCACTGGAGGACATGGTGGACATGATTTCATGTCCAAAAGTGCAGCAAGAAAACAGGAAGCCAATGAGGCCACAGCCAGAGCAAGTCCTGAGATGCCCAAGATGTGATTCTACCAACACCAAGTTCTGCTACTACAATAACTACAGTCTCTCCCAGCCAAGGTTCTTTTGCAAGTCCTGTAGAAGGTATTGGACTAAAGGGGGAACTCTAAGAAATGTTCCTGTGGGTGGCTCTTGCAGGAAGAACAAAAGACCTTCACCTTCTACTTCATCGTCTTCCTCTCCATCTCCATCTTCAAAGAGATCACATGATCAGGCTGCCAATTCTAGCTATGCTAAGCTTCTAAATCAATCAAATGGAAGGATGGGTCTTTTTGATACCCACAACAACTATCATAATATGTACAGTGGACTTGGTAATGGAAGCTCTGGGGAGGTTGAACATGCGTCTACAGAGACTGCTACAGCAATGAAGCAAGAGTTGCTACCCAATGGAGATCAAAATATGGTTTCTTGGGGATTTCCATGGCAGTTCAACAATGAGGATGGAAATTACATGGGTGATCTTGATTCTGGAAGAGAAAGCTGGAGTTTCAATGGAAATGGAATTGCTTCGTCTTGGCATGGGCTTCTCAACAGTCCTCTAATGTAA 690 44.35 MDHSSGQQEAQAQPLEDMVDMISCPKVQQENRKPMRPQPEQVLRCPRCDSTNTKFCYYNNYSLSQPRFFCKSCRRYWTKGGTLRNVPVGGSCRKNKRPSPSTSSSSSPSPSSKRSHDQAANSSYAKLLNQSNGRMGLFDTHNNYHNMYSGLGNGSSGEVEHASTETATAMKQELLPNGDQNMVSWGFPWQFNNEDGNYMGDLDSGRESWSFNGNGIASSWHGLLNSPLM 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5055907 5057219 + CmaCh02G008660.1 Cma02g00866 288617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00866 229 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Cma02g00866 229 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Cma02g00866 229 MobiDBLite consensus disorder prediction 87 122 - -
Cma02g00866 229 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Cma02g00866 229 MobiDBLite consensus disorder prediction 95 122 - -
Cma02g00866 229 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 229 - -
Cma02g00866 229 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 229 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00866 - - - cmax:111499920 455.292
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00866 Cma15g01306 CST
Cma02g00866 Cma20g00463 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00866 Cma-Chr2:5055907 Cma02g00932 Cma-Chr2:5549568 1.08E-37 dispersed
Cma01g00527 Cma-Chr1:2730457 Cma02g00866 Cma-Chr2:5055907 4.20E-42 wgd
Cma13g00200 Cma-Chr13:1588167 Cma02g00866 Cma-Chr2:5055907 4.93E-54 wgd
Cma02g00866 Cma-Chr2:5055907 Cma20g00463 Cma-Chr20:2233484 5.41E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
Vvi6g325 . . Bda02g00784 . Bpe01g00167 . Bma14g00474 . . . . . . . . Cpe05g00869 . . . . . . . . Cla02g02034 Cam02g2154 Cec02g2196 Cco02g2233 Clacu02g2141 Cmu02g2076 Cre02g2389 Cone1ag0700 Cone5ag1208 . . . . Chy11g01309 Cme11g01764 Blo13g01101 . Bda07g00617 . Bpe08g00138 Bpe11g00796 Bma07g00129 Bma11g00150 Sed02g0457 Cmo02g00866 Cmo20g00497 Cma02g00866 Cma20g00463 Car02g00628 Car20g00402 . . Bhi10g00593 Tan05g0289 Cmetu11g1746 . Hepe08g0855 . . . . . . . . . . Csa01g01310 Chy12g00853 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002114 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34481 PF02701 zf-Dof 1.30E-33 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00866 Cma_Chr02 FPKM 7.799837 7.525301 15.334224 15.521719 4.397283 3.76219 4.560449 15.932302 14.363315 16.264585