Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g00871 | ATGGAAGGAAGTAATTCAATCTCCACCGTTTCGTCTACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCCGCTTCACCGCCGCCTCTCGTTCTTAGTCCTTGTGCGGCATGCAAGATTTTGAGGCGGCGATGTGCCGGACGATGTGTATTGGCGCCCTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCGAGTAATATCATTAAATGCTTGCAGGAACTGCCTGAATCACAAAGGGCCGATGCAGTGAGCAGCATGGTTTATGAAGCAAATGCGAGGATCAGAGACCCTGTTTATGGATCAGCCGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGATCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGCTTGTCAACATGGAATGCCAACAAGCCAATCTGGTGGCCTTCGTTTGCAGGGAATTAGCTCAGTCTCACTACAAGTGTTTTGATGATTTCAATGCCAGCACTCACAGCGACTTCCATAGCATCACCCAAACCAACTTCGATGATAATAGCAATGTAAACCAACTATGGATTATCTGA | 579 | 48.7 | MEGSNSISTVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHYKCFDDFNASTHSDFHSITQTNFDDNSNVNQLWII | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 5081153 | 5082560 | + | CmaCh02G008710.1 | Cma02g00871 | 288622 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g00871 | 192 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Cma02g00871 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 191 | - | - | |
| Cma02g00871 | 192 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cma02g00871 | 192 | ProSiteProfiles | LOB domain profile. | 34 | 135 | IPR004883 | - | |
| Cma02g00871 | 192 | Coils | Coil | 114 | 141 | - | - | |
| Cma02g00871 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 11 | 191 | - | - | |
| Cma02g00871 | 192 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 132 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g00871 | Cma-Chr2:5081153 | Cma15g00433 | Cma-Chr15:1939997 | 7.84E-65 | dispersed | |
| Cma01g00534 | Cma-Chr1:2764711 | Cma02g00871 | Cma-Chr2:5081153 | 1.53E-73 | wgd | |
| Cma13g00195 | Cma-Chr13:1537977 | Cma02g00871 | Cma-Chr2:5081153 | 6.70E-71 | wgd | |
| Cma02g00871 | Cma-Chr2:5081153 | Cma20g00467 | Cma-Chr20:2255365 | 8.48E-95 | wgd | |
| Cma02g00871 | Cma-Chr2:5081153 | Cma04g00272 | Cma-Chr4:1334411 | 9.52E-74 | wgd | |
| Cma02g00871 | Cma-Chr2:5081153 | Cma04g01242 | Cma-Chr4:6371441 | 1.12E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34482 | PF03195 | LOB | 3.30E-40 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g00871 | - | - | csv:101215067 | 254.988 |