Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00878 ATGGGGAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGCCACGTCGATTCCGGGAAGTCCACCACCACTGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATTGAAAGATTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTCTTGGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATTGCCTTGTGGAAGTTTGAGACCACCAAATACTACTGCACTGTTATTGATGCTCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCCGATTGTGCTGTTCTCATTATTGACTCCACCACTGGTGGTTTTGAAGCGGGTATTTCCAAGGACGGTCAAACCCGTGAGCATGCTTTGCTTGCGTTTACCCTTGGTGTTAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAGTACTCGAAGGCAAGATATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAGAAGGTGGGCTACAACCCTGATAAAATCCCATTCGTCCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCAACCAACCTCGATTGGTACAAGGGCCCAACCCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCTTCAGACAAGCCACTCCGTCTTCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCAGTTGGACGAGTTGAGACCGGTGTACTCAAGCCAGGAATGGTCGTCTGTTTTGGCCCTACTGGATTGACAACTGAAGTTAAGTCTGTTGAGATGCACCATGAAGCTCTCCCAGAGGCCGTTCCTGGTGACAATGTTGGATTCAACGTGAAGAATGTTGCTGTCAAGGATCTTAAGCGTGGTTTCGTTGCCTCCAATTCCAAGGATGACCCTGCCAGGGAGGCTGCCAACTTCACTTCTCAGGTCATCATCATGAACCACCCAGGACAGATCGGCAATGGCTATGCCCCAGTGCTTGATTGCCACACCTCTCACATTGCCGTGAAGTTTTCTGAGATTCTAACTAAGATTGACAGGCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATGATCAAGATGGTTCCCACCAAGCCGATGGTGGTGGAAACATTCTCTTCATACCCTCCTCTTGGACGATTTGCCGTGAGGGACATGAGACAGACGGTTGCAGTTGGTGTCATCAAGTCGGTCGAGAAGAAGGATCCAAGTGGTGCCAAGGTTACCAAATCCGCAGCCAAGAAGGCTGGCAAGTGA 1350 48.96 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVCFGPTGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKAGK 449
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 5106889 5109736 + CmaCh02G008780.1 Cma02g00878 288629
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00878 449 Gene3D Translation factors 229 316 - -
Cma02g00878 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cma02g00878 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Cma02g00878 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma02g00878 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Cma02g00878 449 PANTHER ELONGATION FACTOR 1-ALPHA 1 447 - -
Cma02g00878 449 PANTHER TRANSLATION FACTOR 1 447 - -
Cma02g00878 449 CDD EF1_alpha_II 230 320 - -
Cma02g00878 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Cma02g00878 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma02g00878 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cma02g00878 449 Gene3D Translation factors 323 430 - -
Cma02g00878 449 CDD EF1_alpha_III 323 426 - -
Cma02g00878 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Cma02g00878 449 Gene3D - 1 226 IPR027417 -
Cma02g00878 449 CDD EF1_alpha 9 227 - -
Cma02g00878 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cma02g00878 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cma02g00878 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cma02g00878 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cma02g00878 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cma02g00878 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Cma02g00878 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00878 Cma-Chr2:5106889 Cma08g01019 Cma-Chr8:6382979 0 dispersed
Cma02g00878 Cma-Chr2:5106889 Cma20g00474 Cma-Chr20:2285299 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00878 K03231 - csv:101213221 892.108