Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g00878 | ATGGGGAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGCCACGTCGATTCCGGGAAGTCCACCACCACTGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATTGAAAGATTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTCTTGGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATTGCCTTGTGGAAGTTTGAGACCACCAAATACTACTGCACTGTTATTGATGCTCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCCGATTGTGCTGTTCTCATTATTGACTCCACCACTGGTGGTTTTGAAGCGGGTATTTCCAAGGACGGTCAAACCCGTGAGCATGCTTTGCTTGCGTTTACCCTTGGTGTTAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAGTACTCGAAGGCAAGATATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAGAAGGTGGGCTACAACCCTGATAAAATCCCATTCGTCCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCAACCAACCTCGATTGGTACAAGGGCCCAACCCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCTTCAGACAAGCCACTCCGTCTTCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCAGTTGGACGAGTTGAGACCGGTGTACTCAAGCCAGGAATGGTCGTCTGTTTTGGCCCTACTGGATTGACAACTGAAGTTAAGTCTGTTGAGATGCACCATGAAGCTCTCCCAGAGGCCGTTCCTGGTGACAATGTTGGATTCAACGTGAAGAATGTTGCTGTCAAGGATCTTAAGCGTGGTTTCGTTGCCTCCAATTCCAAGGATGACCCTGCCAGGGAGGCTGCCAACTTCACTTCTCAGGTCATCATCATGAACCACCCAGGACAGATCGGCAATGGCTATGCCCCAGTGCTTGATTGCCACACCTCTCACATTGCCGTGAAGTTTTCTGAGATTCTAACTAAGATTGACAGGCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATGATCAAGATGGTTCCCACCAAGCCGATGGTGGTGGAAACATTCTCTTCATACCCTCCTCTTGGACGATTTGCCGTGAGGGACATGAGACAGACGGTTGCAGTTGGTGTCATCAAGTCGGTCGAGAAGAAGGATCCAAGTGGTGCCAAGGTTACCAAATCCGCAGCCAAGAAGGCTGGCAAGTGA | 1350 | 48.96 | MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVCFGPTGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKAGK | 449 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 5106889 | 5109736 | + | CmaCh02G008780.1 | Cma02g00878 | 288629 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g00878 | 449 | Gene3D | Translation factors | 229 | 316 | - | - | |
| Cma02g00878 | 449 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 249 | IPR027417 | - | |
| Cma02g00878 | 449 | Pfam | Elongation factor Tu GTP binding domain | 6 | 221 | IPR000795 | GO:0003924|GO:0005525 | |
| Cma02g00878 | 449 | TIGRFAM | EF-1_alpha: translation elongation factor EF-1, subunit alpha | 1 | 433 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
| Cma02g00878 | 449 | Pfam | Elongation factor Tu domain 2 | 248 | 313 | IPR004161 | GO:0005525 | |
| Cma02g00878 | 449 | PANTHER | ELONGATION FACTOR 1-ALPHA | 1 | 447 | - | - | |
| Cma02g00878 | 449 | PANTHER | TRANSLATION FACTOR | 1 | 447 | - | - | |
| Cma02g00878 | 449 | CDD | EF1_alpha_II | 230 | 320 | - | - | |
| Cma02g00878 | 449 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 230 | IPR000795 | GO:0003924|GO:0005525 | |
| Cma02g00878 | 449 | Hamap | Elongation factor Tu [tuf]. | 2 | 432 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
| Cma02g00878 | 449 | SUPERFAMILY | Translation proteins | 231 | 321 | IPR009000 | - | |
| Cma02g00878 | 449 | Gene3D | Translation factors | 323 | 430 | - | - | |
| Cma02g00878 | 449 | CDD | EF1_alpha_III | 323 | 426 | - | - | |
| Cma02g00878 | 449 | Pfam | Elongation factor Tu C-terminal domain | 322 | 429 | IPR004160 | - | |
| Cma02g00878 | 449 | Gene3D | - | 1 | 226 | IPR027417 | - | |
| Cma02g00878 | 449 | CDD | EF1_alpha | 9 | 227 | - | - | |
| Cma02g00878 | 449 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 326 | 429 | IPR009001 | - | |
| Cma02g00878 | 449 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924|GO:0005525 | |
| Cma02g00878 | 449 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924|GO:0005525 | |
| Cma02g00878 | 449 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924|GO:0005525 | |
| Cma02g00878 | 449 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924|GO:0005525 | |
| Cma02g00878 | 449 | PRINTS | GTP-binding elongation factor signature | 148 | 157 | IPR000795 | GO:0003924|GO:0005525 | |
| Cma02g00878 | 449 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g00878 | Cma-Chr2:5106889 | Cma08g01019 | Cma-Chr8:6382979 | 0 | dispersed | |
| Cma02g00878 | Cma-Chr2:5106889 | Cma20g00474 | Cma-Chr20:2285299 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g00878 | K03231 | - | csv:101213221 | 892.108 |