Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00881 ATGGAAATTGATCTGAACCTAACAGCCAGTGATGTGGGCAAGAATGCATATTGCAATGGAAATTGTGAAGAGGGTCACTGCAATTGTTGTTTATCCTCTTCAACTTCTTCATGTTCCTCAAATTCATCGCCAGCTCTCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCTAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAAATGCGCACTTTTGGCCTCCAGCCGCAGATCCTCTGCAGGGTAATCAATGTCCACTTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTCTTAGGCACTGGTCTAGAGGGCAAAGAGTTGGAGGAATTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGAGTGTCGCCTACTAGATCTACACCTCACATGTTTTGCAAAACACTCACAGCGTCTGATACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCCGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCGTCTCAAGAGCTAATTGCCAAGGACCTACATGGCGTCGAGTGGAGATTTAAACATATTTACAGAGGTCAACCAAGGCGGCATCTGCTGACTACTGGATGGAGTCTTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGCATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTGGGCAACCAAAATTCTTGTGCAGATGATCTTGCTCGTGTGGTGAAAGCAATATCTACTAAGAGCATATTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCAGTGACCGTTGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTCTCGGAATTGGTGACATGGATCCCTTGAGATGGCCAAACTCAAAGTGGAGATGCTTGACGGTACGATGGGATAAAGACGGTGATCATCAAGAACGTGTTTCACCCTGGGAGATCGAACCTTCTGTTTCCCTCCCACCCTTGAGTGTTCAGTTTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAACGCCTTTGCTGTAGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCGTTTTATGGACGTGATACTACAAAACGTTCCCTGGAGTTCGAGGTGCGATCTTCTGCACATCAAGCGTCGGGTGGAGCTGAGAAATATAGAGGTGACTACGTAAAGGTTCATCCAAACTCATCTTTCACAGGCTTTATGGAATCTGAAAGATTCCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGACCACAAACAAGAAAACCAGAACATTGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCCTTCAACACATTTCACTCACCAAACTCTAGTTTTTATCACATGGCGTCAAATGGAGCCCAAAACATGTATTTCCCTCGTAGTGAATTTTACAGTACAGGCCAAGCTGCTGCTGTGATGCGCTCAAATGATGGCAACTTTCCAAGAGAGAGTGCCTTGTTCAGCCCATCTGTTGATGCTAGTGTTATGAGCACTACTTCAGGGTCGAATATAAGGAATTCAAAGGATGAAAGTGTGAATGAGAATTCAACTGGCTGTAGACTTTTTGGCTTTTCCTTGACTACAGAAACTGCTGCAAACATGCAGAGTTCAGGGAAGAGGAGTTGTACTAAGGTTCACAAACAAGGTAGTCTAGTGGGAAGAGCCATTGATCTCTCTAGACTTAATGGCTATACTGATCTGCTTTCTGAACTGGAGCGGCTGTTTTGCATGGAAGGACTCTTGAAAGATCCTGAAAAAGGATGGCGTGTACTGTACACCGACAACGAGAACGACGTAATGGTTGTTGGGGATTATCCATGGCTTGACTTCTGTGATGCGGTTTCAAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACCAATGGAGTGATCAGCGATGATACTCAAAGCTGCTTAGACCAAGCTCCTTTGTGTATGGAAGCCTCAAAATCCTCTTCCGTGGGCCAACCTGATTCTTCTCCCACAGTATCGAGCTCGAAGTCAGTAGCTTTGCTTCGTCCTCTCGGTCCCATAGGTTCGAATCTCGAGCGACCGATGATCATTCTTCTCACTTCACTAGTTCCTGCACCTATTTCATATAGTTTCGCATCTCTTAGTAGTCGACCGGTTGTGTATTCGTTTACATACCCGTTGCCTCCTAAACATTGTATGGCCTGTAAGATTGAACAAGAACATGAACGATTTACACATGGTAATGTTACGCACACAATGTGCTAA 2574 44.87 MEIDLNLTASDVGKNAYCNGNCEEGHCNCCLSSSTSSCSSNSSPALVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFGLQPQILCRVINVHLLANKENDEVYTQLTLLPLPEFLGTGLEGKELEELALNGADGDGSGVSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCADDLARVVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVLGIGDMDPLRWPNSKWRCLTVRWDKDGDHQERVSPWEIEPSVSLPPLSVQFSPRLKKLRTSLQAAPPNAFAVGRGGFMDFEDSIRSSKVLQGQENVGIVSPFYGRDTTKRSLEFEVRSSAHQASGGAEKYRGDYVKVHPNSSFTGFMESERFLKVLQGQEICSLRPQTRKPEHCLGVWGKFNLSDNSFNTFHSPNSSFYHMASNGAQNMYFPRSEFYSTGQAAAVMRSNDGNFPRESALFSPSVDASVMSTTSGSNIRNSKDESVNENSTGCRLFGFSLTTETAANMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFCMEGLLKDPEKGWRVLYTDNENDVMVVGDYPWLDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVSSSKSVALLRPLGPIGSNLERPMIILLTSLVPAPISYSFASLSSRPVVYSFTYPLPPKHCMACKIEQEHERFTHGNVTHTMC 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5229657 5236599 - CmaCh02G008810.1 Cma02g00881 288632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00881 857 CDD B3_DNA 167 269 IPR003340 GO:0003677
Cma02g00881 857 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Cma02g00881 857 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 607 766 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma02g00881 857 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 31 603 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma02g00881 857 Gene3D - 167 271 IPR015300 -
Cma02g00881 857 SMART B3_2 169 271 IPR003340 GO:0003677
Cma02g00881 857 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Cma02g00881 857 ProSiteProfiles PB1 domain profile. 650 734 IPR000270 GO:0005515
Cma02g00881 857 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma02g00881 857 Pfam AUX/IAA family 638 735 IPR033389 -
Cma02g00881 857 Gene3D - 333 402 - -
Cma02g00881 857 Gene3D - 646 739 - -
Cma02g00881 857 SUPERFAMILY DNA-binding pseudobarrel domain 162 280 IPR015300 -
Cma02g00881 857 PANTHER AUXIN RESPONSE FACTOR 607 766 - -
Cma02g00881 857 PANTHER AUXIN RESPONSE FACTOR 31 603 - -
Cma02g00881 857 SUPERFAMILY CAD & PB1 domains 652 729 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00881 Cma20g00475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00881 Cma-Chr2:5229657 Cma07g00214 Cma-Chr7:992555 5.88E-153 dispersed
Cma02g00881 Cma-Chr2:5229657 Cma20g00475 Cma-Chr20:2288731 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34483 PF02362 B3 9.70E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00881 - - cmo:103501935 1346.26