Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00885 ATGACCGTAATCGATGTCATCTTCCGAGTCGATTCCATTTGCAAGAAATACGAGAAGTATGATGTCGAGAAACAGCGCGAGCTCAATGCTTATGGTGATGATGTTTTTGCTCGCCTCTACGCCGCCGTCGAACTCGAAATCGAAGCCGCTCTCCAGAAATATGAGAGTGCCTGTACGGAGAAGAATAGGGCTGCTGCAGTTGCGATGAACGCTGAGGTTCGACGGAAGAAGGCCCGATTGATGGATGAAGTTCCCAAGCTTCATAAATTGGCTCGCAAGAAGATTAAAGGGGTTCCGAAAGAAGAACTTGAGGTCAGAGGTGATCTTGTTCTTGCGCTTGAAGAGAGGATTAAAGCGATTCCAGATGGGAGTACGACAGGCAAACCATCTGGAGGATGGGCCTCCACCTCATCTAACAATATTAAGTTTGATTCAACAACAGATGGACACTTCGAGAGCGAGTATTTCCAACAAAGCGAAGAATCGAGTCAATTTCGACAGGAGTATGATATGCGGAAGATGAAACAGGACGAAGGTCTGGATGTCATATCTGAAGGGTTGGATATGCTGAAAAATTTAGCCCATGATATGAATGAGGAATTGGATAGGCAAGTTCCATTAATTGACGAGATTGACTCAAAGGTAGACAAGGTGACCAATGAGATGAAAAACACCAATGTTAGGCTCAAGCAAACGCTTAATGAGGTGAGATCCAGCCAAAACTTCTGCATCGATATCATTCTTCTCTGTATAATTCTTGGAATCGCTTCTTACTTGTACAATATATTGAGCGGAAATGATTGA 804 43.91 MTVIDVIFRVDSICKKYEKYDVEKQRELNAYGDDVFARLYAAVELEIEAALQKYESACTEKNRAAAVAMNAEVRRKKARLMDEVPKLHKLARKKIKGVPKEELEVRGDLVLALEERIKAIPDGSTTGKPSGGWASTSSNNIKFDSTTDGHFESEYFQQSEESSQFRQEYDMRKMKQDEGLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDSKVDKVTNEMKNTNVRLKQTLNEVRSSQNFCIDIILLCIILGIASYLYNILSGND 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5257841 5259962 + CmaCh02G008850.1 Cma02g00885 288636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00885 267 MobiDBLite consensus disorder prediction 121 141 - -
Cma02g00885 267 CDD SNARE_Qc 175 231 - -
Cma02g00885 267 Gene3D - 170 231 - -
Cma02g00885 267 SMART tSNARE_6 165 232 IPR000727 -
Cma02g00885 267 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma02g00885 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cma02g00885 267 Pfam SNARE domain 207 256 IPR000727 -
Cma02g00885 267 PANTHER SYNTAXIN-73 1 261 - -
Cma02g00885 267 Coils Coil 208 235 - -
Cma02g00885 267 PANTHER SYNTAXIN 1 261 IPR045242 -
Cma02g00885 267 SUPERFAMILY SNARE fusion complex 163 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01054 Cma-Chr1:7801533 Cma02g00885 Cma-Chr2:5257841 4.59E-123 dispersed
Cma14g00203 Cma-Chr14:874017 Cma02g00885 Cma-Chr2:5257841 6.52E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00885 K08506 - csv:101211289 427.943