Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00895 ATGGCCATGGCTATAGCTCATCACAGAGAGAGTAGTAGTGGGAGCTTAACCAGGCATCTTGACAGTACTGGAAAGTACGTTCGATACACATCAGAGCAGGTTGAGGCTCTTGAGCGAGTCTATGCTGAATGCCCAAAGCCAAGTTCTCTTCGAAGGCAGCAGCTCATCCGGGAATGCCCAATTCTTTCAAACATAGAGCCCAAACAGATCAAAGTTTGGTTTCAGAATCGGAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTGAATGCCATGAACAAATTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAGGTGTCCCAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTACAAACGGTGCCAGCAGCAACCACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTAAAACAGATGCTAATAACCCAGCTGGGCTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGCGGCGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTGCAAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACTATGTTTCCAGCTGGAAATGGTGGAACAATTGAACTTGTCTACACACAGGTGTACGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATACACAATAACTTTGGAAAATGGCAGCCTTGTGGTCTGTGAGAGATCTCTCTCGGGTTCTGGTGCCGGTCCTAGTCCAGCTGCTGCTGCTCAGTTTGTTAGAGCTGAGATGCTCCCAAGTGGTTATCTGATTCGACCATGTGAGGGCGGAGGGTCCATCATACATATAGTAGATCACCTAAATCTTGAGGCGTGGAATGTTCCTGAGGTGCTGCGACCGCTTTATGAATCGTCGAAAGTCGTGGCTCAGAACATGACTATTGCAGCACTACGGTACGTTAGGCAAATAGCTCAGGAGACGAGCGGTGAAGTGGTTTATGGTTTGGGCCGACAACCTGCTGTTCTGCGAACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATTTGGTGAATGGATTCAATGACAACGGATGGTCATTGATTAATTGTGAAGGTGCTGAGGATGTCGTACTTGCTGTGAATTCTACGAAAAATTTCGGCACGACATCCAACCCCGCGAACTCCTTAACGTACCCTGGGGGAGTTCTTTGTGCTAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCTGTACTAGTTCGTTTCTTGAGAGAACACCGTTCCGAATGGGCTGATTTCAACATCGATGCATACTCTGCAGCAACCCTTAAAGCCAATTCATACGCATATCCAGGGATGAGGCCGACAAGGTTTACCGGGAGTCAAATCATCATGCCACTTGGCCATACAATCGAGCACGAAGAGTTGCTTGAAGTTATTCGTCTTGAAGGACATCCTATGGTACAAGAAGACGCTTTTGTTTCAAGGGACATTCATCTTCTTCAGATATGTAGTGGAATCAACGAGAACGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCCCCGATCGATGAGATGTTTCCAGACGATGCCCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCAAGAACAATAACCCTACCACCTGATGCTTTCTTGATGCAGAGTGATGCTCAAGGTGCATTGACTACGCAACGGACTCTCGATCTAACATCAAGTCTTGAAGTGGGTTCTGGAACAAGCAACATTGCAGGAGATGCATCGTCGAGTCAGAGCCCTCGATCAGTGTTAACTATTGCGTTCCAGTTTCCTTTCGAGAGCAGCATGCAGGATAACGTAATGAACATGGCACAGCAGTACGTACGTAGCGTCATTTCCTCGGTGCAGAGAGTTGCAATGGCCATATCTCCTTCTGGGGGCAGTCCATCACTAGGTCCAAAGTTGTCTCCTGGTTCTCCAGAAGCACTCACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTAGGAACGGAGTTGATCAGTTCATATAGCTTGGAAAGCGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGTTGAAGTCGCTGCCTGTTTTCATGTTTGCGAACCAAGCTGGGCTCGACATGTTGGAGACAACTCTAGTAGCATTACAAGACATCACATTGGATAAAATTTTCGACGAGGCGGGTCGTAAAGCTTTGTGTTCTGATTTTCCAAAGTTAATGCAGCAGGGATTTGCATACTTACCTGGAGGAATCTGTGCATCGACAATGGGGCGACACGTTTCGTACGAACAAGCGATTGCATGGAAAGTCCTCGAGGCAGACGAAACAACTGTCCATTGCCTTGCCTTCTCCTTCATAAACTGGTCTTTTGTTTGA 2565 47.1 MAMAIAHHRESSSGSLTRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAATTDASCDSVVTTPQPSKTDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPAKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSPAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQNMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDLVNGFNDNGWSLINCEGAEDVVLAVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGINENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTITLPPDAFLMQSDAQGALTTQRTLDLTSSLEVGSGTSNIAGDASSSQSPRSVLTIAFQFPFESSMQDNVMNMAQQYVRSVISSVQRVAMAISPSGGSPSLGPKLSPGSPEALTLAHWICKSYSLQLGTELISSYSLESDSLLKNLWNHQDAILCCSLKSLPVFMFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFINWSFV 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5310591 5316235 + CmaCh02G008950.1 Cma02g00895 288646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00895 854 Gene3D - 200 378 IPR023393 -
Cma02g00895 854 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Cma02g00895 854 Pfam START domain 164 372 IPR002913 GO:0008289
Cma02g00895 854 SUPERFAMILY Bet v1-like 163 375 - -
Cma02g00895 854 Gene3D - 19 91 - -
Cma02g00895 854 CDD START_ArGLABRA2_like 158 374 - -
Cma02g00895 854 SMART HOX_1 22 88 IPR001356 GO:0003677
Cma02g00895 854 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Cma02g00895 854 Pfam MEKHLA domain 710 853 IPR013978 -
Cma02g00895 854 SMART START_1 163 373 IPR002913 GO:0008289
Cma02g00895 854 CDD bZIP 77 116 - -
Cma02g00895 854 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cma02g00895 854 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 854 - -
Cma02g00895 854 CDD homeodomain 25 85 IPR001356 GO:0003677
Cma02g00895 854 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 854 IPR044830 GO:0003700
Cma02g00895 854 Coils Coil 80 121 - -
Cma02g00895 854 Pfam Homeodomain 26 83 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00895 Cma20g00486 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00895 Cma-Chr2:5310591 Cma07g00063 Cma-Chr7:343575 0 dispersed
Cma12g00818 Cma-Chr12:5996218 Cma02g00895 Cma-Chr2:5310591 0 transposed
Cma02g00895 Cma-Chr2:5310591 Cma20g00486 Cma-Chr20:2354639 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34485 PF01852 START 1.50E-46 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00895 K09338 - csv:101215773 1567.75