Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00897 ATGCTTAAGAGGAAGAAGAAGAAGGGGAACGGGTTTCTCTTCTTTTTGGTGTTCTTTGTTTACTGGGCATTGCATTTGGGGGAAAACGCAATCATTCGAATGAAAGAAGCGGATAAGAACTTGGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCTATTAACTCCAAGGTCTTTTACTTCCCTCAGGGTCATGCCGAGCACGCTCAGGCCGCCGTCGATTTCACTTCTTCACTTAGAATCCCGCCGCTTATTCCATGTAGAGTGCTCGCCGTCAAGTTCTTGGCTGATAATGAAACGGATGAAGTTTATGGGAATGTACGACTGGTTCCACTGGCGAACAACGAAATTAATTGCGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCTGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGAGGCTGGATTACACGGCGGATCCACCGGTTCAGACGGTGATTGCTAAGGATGTCCACGGCGAGGTTTGGAAGTTTCGGCATATTTACAGGGGGACGCCTCGTCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTCAATCAGAAGAAGCTTGTCGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCTGCTGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATAGCATCCCATCATACGGTGGGTTGACGATGTTTCTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCTAATGGTGGTGGGAATTTGAGGGGAAAAGGCAAAGTTAGGCCAGAATCAGTGATTGAAGCGGCGGCGCTGGCAGCGAGTGGGCAGGCGTTTGAGGTGGTTTATTACCCACGCGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCAGTTCGAGCCGCCATGAGAATCCAGTGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAAACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCCTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCGAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGACGAGCCAGATTTGCTACAGAACGTGAAGCGTGTTAGCCCATGGTTGGTCGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCTCCACCAAGAAAGAAGTTTCGACTACCTCAACACCCCGACTTTCCCCTCGACAGCCAATTCCAATTGTCGTCGTTTCCAAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTCCTCAGATTTCCATCTCAACAACAAACTGCAACTTGGGCTGCTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCCAGAATTTCCCATAGATTGGTTACAGACCACAGAGGCAGCGGCAGTCAGAACTCGTCGGCACTGCTCAGTGTGGAGAACACTGGTCCGAAGTTGGAACGATCTGATTCTGTGAAGAAGTATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACACGCAGCTCTTCTGGTGACGTTCACTCACCTCAGACCGAGAAAAGTTCCTTAGACATGAATTTGGAGAGAGTGAAATTCCTATCTGATGGCTCAGGATACACTTTCAAGCAGCAGCAGATATCTCCAAACAAGTCACCGGAAGCTGGATTTCCATGGTACCAGGGTTATGAAGCCACTGAACTCGGCCTGGACACCGGTCACTGCAAGGTATTCATGGAGTCAGAAGATGTTGGCCGAACGCTTAACCTTTCGGTCATTGGCTCGTATGAAGAACTATACCGGAGGCTGGCAAACATGTTCGGAATGGAGAAACCAGACATTCTTAGCCATGTCCTTTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGACAAACCATTCAGTGATTTTATCAAAACAGCTAGGAGACTGACGATTCTAACTGACTCGGGGTCGGACAAGATGGTCGGAAGGAGATTGATGGATGGAATGCGAAGTGGTGAAAATGGATTAGATTCCTCAAACAAGACGGGCCCCTTGAGCATATTTGCGTAG 2250 48.71 MLKRKKKKGNGFLFFLVFFVYWALHLGENAIIRMKEADKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQAAVDFTSSLRIPPLIPCRVLAVKFLADNETDEVYGNVRLVPLANNEINCEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNSIPSYGGLTMFLRDEDNKLSRKGSLSSNGGGNLRGKGKVRPESVIEAAALAASGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFQLSSFPSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISSSDFHLNNKLQLGLLPSSFQQLDFHSRISHRLVTDHRGSGSQNSSALLSVENTGPKLERSDSVKKYQFLLFGQPILTEQQITRSSSGDVHSPQTEKSSLDMNLERVKFLSDGSGYTFKQQQISPNKSPEAGFPWYQGYEATELGLDTGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKMVGRRLMDGMRSGENGLDSSNKTGPLSIFA 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5336352 5340741 - CmaCh02G008970.1 Cma02g00897 288648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00897 749 Pfam B3 DNA binding domain 145 246 IPR003340 GO:0003677
Cma02g00897 749 SMART B3_2 145 247 IPR003340 GO:0003677
Cma02g00897 749 SUPERFAMILY DNA-binding pseudobarrel domain 140 250 IPR015300 -
Cma02g00897 749 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 725 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma02g00897 749 CDD B3_DNA 144 245 IPR003340 GO:0003677
Cma02g00897 749 Gene3D - 351 424 - -
Cma02g00897 749 ProSiteProfiles PB1 domain profile. 636 716 IPR000270 GO:0005515
Cma02g00897 749 PANTHER AUXIN RESPONSE FACTOR 35 725 - -
Cma02g00897 749 Pfam Auxin response factor 313 396 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma02g00897 749 MobiDBLite consensus disorder prediction 729 749 - -
Cma02g00897 749 Gene3D - 143 247 IPR015300 -
Cma02g00897 749 MobiDBLite consensus disorder prediction 733 749 - -
Cma02g00897 749 Gene3D - 635 721 - -
Cma02g00897 749 ProSiteProfiles B3 DNA-binding domain profile. 145 247 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00897 Cma20g00489 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00897 Cma-Chr2:5336352 Cma04g02570 Cma-Chr4:17655759 0 dispersed
Cma03g01237 Cma-Chr3:8187091 Cma02g00897 Cma-Chr2:5336352 5.34E-62 dispersed
Cma02g00897 Cma-Chr2:5336352 Cma20g00489 Cma-Chr20:2380923 0 wgd
Cma02g00897 Cma-Chr2:5336352 Cma03g01236 Cma-Chr3:8185388 7.38E-171 wgd
Cma02g00897 Cma-Chr2:5336352 Cma07g00923 Cma-Chr7:4422962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34486 PF02362 B3 7.60E-22 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00897 - - bhj:120088819 1327.38