Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00901 ATGACCGGTACGTGGAAGAAACTCAAGATGGCTTTTGGGACTCGTATGTGTCTCCATCTTCCTCGTGTTGCTGGGGATTCGACGCCGTCTAGTAATGTTGCTCCCATGTCCTCCGAGGCTGTTTCTCCGATGGGTAGTGCTTCAAATTGCCGCCAATCTTCGCCGATTCATTCTTCGTCTAGTTCCCGTGTATCCAAAAGCGGATCAAGGTCTCCTAGGAGGACCTGTGCAATATGCTTGATCACCATGAAAGCAGGGAATGGGCATGCTATTTTCACTGCAGAGTGTTCTCACTCTTTCCATTTCCATTGCATTGCCTCAAATGTAAAGCATGGGAGCCAAATTTGCCCTGTTTGCAGAGCGAAATGGAAAGAAATTCCTTTCCAGATTTCCACTTCGGATTGCGCTAGCCCCAGAACCAACCCAGTTGGCTTGGCCCCAGATGATCCATGGATGGCTATGGTTCGACAGATGACTTCTCCTCGCTCCAATACCGGTAGACAGATCTCCTCTCTTTTTCATGGTTCTGAACCAGTAGCTTATGATGATGATGAAGCTTTAGATCAACAACCTCATGCCACCGAGAGAAACACATCTAATGATGGTGCCGCTGTTCATAGTTGCACTGATAAAGTAGAGGTCAAAACGTACACTGAAATTTCAGCTGTTCCAAGATCAGTTTCTCGTGATCACTTCTCTGTGTTAGTCCATGTCAAGGCTCCTTTCTCCATTGCAACACAAAATAACTCTAGAAGCCAGGCTGCATTGCCTCTATTGAATCAACCTTCTCGTGCACCAGTTGATCTGGTAACAGTGCTTGATGTTAGTGGCAGTATGGCAGGTACGAAGCTTACCCTGCTCAAACGTGCTATGGGTTTTGTGATCCAGAATCTCAGCCCTTCTGATCGGCTTTCGGTCATATCATTCTCCTCAACCGCTCATCGTCTTTTCCCGCTTTCTCGAATGACTGACGTTGGACGACAGCAGGCATTGCGGGCTGTTAATTCTCTATCATCAAACGGTGGGACAAACATTGCTGAAGGCTTGAAGAAAGGTGCCAAGGTGTTGGTTGACCGCAAGTTGAAGAACCCTGTTGCTAGCATTATAATGTTGTCTGATGGGCAGGATACATATACTTTCAATGGTTCTAGTAGTGCTCGTCCTCAAATAGATTACGAGTCCCTCCTTCCAGTTTCAATTCTTCGCAATAACCATTCTGGAATGCAGCAGATACCGGTGCATACGTTTGGAGTCGGTGCAGACCATGATCCCGTGACAGCGCATATGATTTCCAACGCATCTGGGGGCACATTTTCAGTTATAGAAAACGAAAGCACAATCCAGGATGCATTCGCTCAGTGCATCGGTGGCCTCTTGAGCGTGGTGGTGCAGGATCTGCAGGTTGAAGCAAGATGCATTCACCCAAGTCTGCAGCTTGGTTCAATACAAGCAGGAAGTTACCAAGCCAGTATCACAGAACGTGCAAGACGTGCCACCGTACACTTTGGGGACTTATATGCCAAAGAAGAGAGGGACTTTTTGTTGACACTCAACATTCCAGTTGATGAATCTGAAGGTGAGATGCCATTGCTAAAGGTTAAATGCGTTTACAAGAACCCCATCACCAAAGAGCTAATCACTTTGGACGAGGTACGTGAGGTTCAAATACAGAGGCTAGACAGAGTAGGGGAACAAGCAGTGTCATTAGAAGTAGACAGGCAACGAAATAGATTCCGAGCGGCAGAGGCGATATCGGAGGCTAGAGTTGCTGCGGAACGAGGTGATTTAGCTGGTGCAGTGTCTTTGTTGGACAATTGTTATAGAACCGTGTCTGAATCAGCATCTGGTCGAGGTAGTGACCAATTATGTGCGGCTCTTTGCGCCGAGCTGAAGGAAATGAAGGAAAGAATGGCGACGAAGCATATGTACGAGGCATCTGGAAGAGCATATATGCTGTCGGGATTGAGCTCGCATTCATGGCAGAGAGCAACTGCGAGAGGGGATTCAGTGGACATGGGAAGCGCAGTGCAGAGTTATCAAACGCCATCAATGGTGGATATGGTGACTCGTTCTCGGACCATGATATTGGGGGGGCCGCCATCTCAAAGAACACTGATTCCCACTCACTCTTTCCTGGAAATTTATGGCGGAGCCTTCAAATTTATCGACGGAGTCATTGGCACTCTGAATGGCGAAGAAAGCGACACCTGCTACGACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGATTGGGTTCGCCCAGATGGCCGAGGCTTCCACCAGTGTCGTCCTGCTTGACTGGTGCTGTAAATGCTGCTTCAGGTTCAGCTTATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTGTTTTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTTGACTCCAGTTCGGGGTCAGGGATCAGAAAACAAGGAGTTCTCTTCAATGCTGCATAAAGCTTTGGAAGGGGCAATAATACTGGAGATGTTCCCCAAGACAACTGTTGATGTATTTGCCTTGGTGTTGGAATCTGGAGGCTGTGACCTTCCGGTTGTAATATCATGTGCTAGTCTTGCTCTTGCTGATGCAGGGATTATGCTTTACGATCTTGTTGCCTCAGTTTCTGTGTTACTCTCATCTGTCAACCAGAGCTGTTTTGGGAAGAATCTTCTTATTGATCCTATGTTGGAAGAGGAAAAGTACGAAGAGGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAACTCACTCAGCTCACTATTACAGGCGAGTGGTCAACTGCTAAAATTAATGAGGGTATGCAACTTTGCGTTGATGCGTCGTGTACAGCTTGTGAAGATCATGCGGTCATGCTTGAAGGAATCTGCCACCATTTCAGAGGAATAAAAGTGGCCATTTTTTCTTTCAAGGAAAAGAACACAAAAGAATTGGAATGGTGGAAGAAGCGAAAGCCAGAGATTCAGAGAAGCTCACAAGTTTGGTTTCCTGGTGTTCACAATAATCTATCACAAAAGGTTGACTACATTAGAACTGCTGCCAGAGGTTCATTTGGGGAGATCTTTATGGCTTATGGTAGTTCTAGATCCGTAAGATTCCAAGATGATCTTGAATCATCCACCCTGCCTACTATCAATGGTGGTGGCGTGAAGAAGATCATATACAACCTTGATGGCACACATATACCAGAATCGACGGCTTCCGGGAAGTCTGGAAGATCCTTGCGAGCTAAAGTTCTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTGCAAAGAAAAATATTGGATCCTAGAGGCCAAACCATAAGGAGATGGAATAAAATCTTTTTAGTAGCTTGTTTAGTCTCTTTGTTTGTAGACCCACTTTTCTTTTACTTGCCTGTCGTCCGGGATAACGTCTGCATTGATATAGGAGTAGGTCTCGAAGTCGTCCTCACAATTATAAGAACAATAGCTGATGTTTTCTACACAGTTCATATTCTCATTAAGTTCCGTACAGCTTATGTCGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGACACTTGTAAGATAGCAGAAAGGTATCTACGGCATGGTTTCTGGATTGATTTCATTGCAGCAGTGCCAGTTCCTCAGGTACTGATATGGATTGTCATCCCCAACCTCAGTGGCTCAATAATGACAAACACCAAGAACTTTCTGCGGTTCTTTCTCATATTTCAGTACATCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTGTACATGTTGGCAAGCCATGTTCTAGGAGCTTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAACACTTTGTAAGTTTGACAAATCTTGTAACAATGGATTCTTCGACTGTCATAAGATCGATGACCCTCAAAGGGGCTCGTGGTTTCGCACGAGCAACATCAAAAACACATGCAATCCAAATGATCCCTTTTATCAATTTGGTATATATGGTGATTCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGTCTGAAAAATCTCAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAGTTTTTGCCATAATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGCAATATGCAGAAATACCTCCAATCGACGACTGTCCGGTTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAGCAATGGATGCATCACAGGCAGCTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTTGATGAAGAATCGCTGCTTAGAAGCCTTCCATTGGATCTTCGAAGAGACATAAAACGTCACCTCTGCCTCGATCTTGTTCGAAGGGTTCCATTGTTCGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAGCCTGCCTTGAGCACAGAAGGCACATTTCTGGTGCGAGAGGGCGATCCAGTCAATGAAATGCTATTCATAATCAGAGGACATCTCGATTCATACACCACTAATGGCGGCAGAACAGGATTCTTCAACTCCTGTTGTATCGGTCCAGGTGATTTCTGTGGTGAGGAGCTGCTAACATGGGCACTCGATCCTCGTCCCAGCGTTGTACTTCCTTCTTCCACTCGCACGGTTAAAGCCATCTCAGAAGTAGAAGCATTTGCTCTCATAGCAGAGGATTTGAAATTCGTATCCTCTCAGTTCAGAAGACTCCACAGCAAACAACTCAGACACAAGTTTCGATTCTACTCGCATCAATGGCGAACATGGGCTGCCTGCTTTGTTCAAGCAGCGTGGCGGCGATATAAGAGACGCAAAGGAAGAGCCGATTTCATGGCTAGAGAGAGGTATCCAGCTACCAACCTCGACTCGCCATTTTCACCACCAACTGCATCAAATTCGGATACATGTTCAGGAAACCCTAGAATAAGGATGAATAAGCGCTGTGTGTCGGATGCTGGGGTAGTAAGCTCACTGCAGAAGCCAGAAGAGCCCGACTTCTCCATTGTTGAGGAATGA 5241 45.62 MTGTWKKLKMAFGTRMCLHLPRVAGDSTPSSNVAPMSSEAVSPMGSASNCRQSSPIHSSSSSRVSKSGSRSPRRTCAICLITMKAGNGHAIFTAECSHSFHFHCIASNVKHGSQICPVCRAKWKEIPFQISTSDCASPRTNPVGLAPDDPWMAMVRQMTSPRSNTGRQISSLFHGSEPVAYDDDEALDQQPHATERNTSNDGAAVHSCTDKVEVKTYTEISAVPRSVSRDHFSVLVHVKAPFSIATQNNSRSQAALPLLNQPSRAPVDLVTVLDVSGSMAGTKLTLLKRAMGFVIQNLSPSDRLSVISFSSTAHRLFPLSRMTDVGRQQALRAVNSLSSNGGTNIAEGLKKGAKVLVDRKLKNPVASIIMLSDGQDTYTFNGSSSARPQIDYESLLPVSILRNNHSGMQQIPVHTFGVGADHDPVTAHMISNASGGTFSVIENESTIQDAFAQCIGGLLSVVVQDLQVEARCIHPSLQLGSIQAGSYQASITERARRATVHFGDLYAKEERDFLLTLNIPVDESEGEMPLLKVKCVYKNPITKELITLDEVREVQIQRLDRVGEQAVSLEVDRQRNRFRAAEAISEARVAAERGDLAGAVSLLDNCYRTVSESASGRGSDQLCAALCAELKEMKERMATKHMYEASGRAYMLSGLSSHSWQRATARGDSVDMGSAVQSYQTPSMVDMVTRSRTMILGGPPSQRTLIPTHSFLEIYGGAFKFIDGVIGTLNGEESDTCYDYVFSVSYYPQNQATHLQKRRRRLGSPRWPRLPPVSSCLTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFLTPVRGQGSENKEFSSMLHKALEGAIILEMFPKTTVDVFALVLESGGCDLPVVISCASLALADAGIMLYDLVASVSVLLSSVNQSCFGKNLLIDPMLEEEKYEEGSLMITCMPSRYELTQLTITGEWSTAKINEGMQLCVDASCTACEDHAVMLEGICHHFRGIKVAIFSFKEKNTKELEWWKKRKPEIQRSSQVWFPGVHNNLSQKVDYIRTAARGSFGEIFMAYGSSRSVRFQDDLESSTLPTINGGGVKKIIYNLDGTHIPESTASGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQTIRRWNKIFLVACLVSLFVDPLFFYLPVVRDNVCIDIGVGLEVVLTIIRTIADVFYTVHILIKFRTAYVAPSSRVFGRGELVIDTCKIAERYLRHGFWIDFIAAVPVPQVLIWIVIPNLSGSIMTNTKNFLRFFLIFQYIPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRTLCKFDKSCNNGFFDCHKIDDPQRGSWFRTSNIKNTCNPNDPFYQFGIYGDSITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIVFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEESLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCCIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKGRADFMARERYPATNLDSPFSPPTASNSDTCSGNPRIRMNKRCVSDAGVVSSLQKPEEPDFSIVEE 1746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5361560 5374129 - CmaCh02G009010.1 Cma02g00901 288652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00901 1746 MobiDBLite consensus disorder prediction 26 70 - -
Cma02g00901 1746 CDD CAP_ED 1526 1657 IPR000595 -
Cma02g00901 1746 Gene3D Helix hairpin bin 1453 1517 - -
Cma02g00901 1746 SUPERFAMILY Ribonuclease PH domain 2-like 896 973 IPR036345 -
Cma02g00901 1746 SMART cnmp_10 1526 1657 IPR000595 -
Cma02g00901 1746 SMART VWA_4 266 451 IPR002035 -
Cma02g00901 1746 CDD vWA_C3HC4_type 267 442 - -
Cma02g00901 1746 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
Cma02g00901 1746 CDD RING-H2 76 120 - -
Cma02g00901 1746 Pfam Ring finger domain 75 120 IPR001841 -
Cma02g00901 1746 Pfam 3' exoribonuclease family, domain 1 776 894 IPR001247 -
Cma02g00901 1746 Gene3D - 1138 1450 - -
Cma02g00901 1746 Pfam Ion transport protein 1135 1453 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma02g00901 1746 Gene3D - 730 985 IPR027408 -
Cma02g00901 1746 SUPERFAMILY vWA-like 264 455 IPR036465 -
Cma02g00901 1746 Gene3D Jelly Rolls 1524 1644 IPR014710 -
Cma02g00901 1746 CDD RNase_PH_MTR3 778 983 - -
Cma02g00901 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 127 IPR013083 -
Cma02g00901 1746 SUPERFAMILY cAMP-binding domain-like 1456 1651 IPR018490 -
Cma02g00901 1746 Pfam von Willebrand factor type A domain 268 453 IPR002035 -
Cma02g00901 1746 ProSiteProfiles VWFA domain profile. 268 455 IPR002035 -
Cma02g00901 1746 Pfam VWA / Hh protein intein-like 620 692 IPR032838 -
Cma02g00901 1746 Gene3D von Willebrand factor, type A domain 268 456 IPR036465 -
Cma02g00901 1746 SUPERFAMILY Ribosomal protein S5 domain 2-like 776 894 IPR020568 -
Cma02g00901 1746 SUPERFAMILY RING/U-box 70 126 - -
Cma02g00901 1746 ProSiteProfiles cAMP/cGMP binding motif profile. 1526 1623 IPR000595 -
Cma02g00901 1746 SMART ring_2 76 119 IPR001841 -
Cma02g00901 1746 PANTHER - 1058 1745 - -
Cma02g00901 1746 SUPERFAMILY Voltage-gated potassium channels 1126 1448 - -
Cma02g00901 1746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1058 1745 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00901 Cma20g00494 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00901 Cma-Chr2:5361560 Cma20g00496 Cma-Chr20:2425047 0 dispersed
Cma14g00640 Cma-Chr14:3173518 Cma02g00901 Cma-Chr2:5361560 0 dispersed
Cma15g00466 Cma-Chr15:2076266 Cma02g00901 Cma-Chr2:5361560 0 dispersed
Cma16g00810 Cma-Chr16:4474722 Cma02g00901 Cma-Chr2:5361560 3.73E-120 dispersed
Cma20g00494 Cma-Chr20:2412074 Cma02g00901 Cma-Chr2:5361560 9.10E-115 transposed
Cma02g00901 Cma-Chr2:5361560 Cma20g00493 Cma-Chr20:2405631 0 wgd
Cma02g00901 Cma-Chr2:5361560 Cma03g01233 Cma-Chr3:8164935 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00901 K05391 - csv:101210775 1296.18