Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma02g00907	ATGGAAACGATGACGAACAGAGGAACCCTTCAATTTACGGATGTTTCAACGGCTCTTTCCAATCTCATTCTAACTGCCGGAGGAAATACTCTGGATTCAATCTTCTCTCACTGTGACAATTTCAGCCGCTCTGTAATCGATGGCGTAGATTTCGAGCAGGCAGTTGGGTCGTCGGTGTATCTCCGACAGCGGGAAGTACTGCAGAGATTTTCTCAGGAAAGGAAAGCAAATGGGTCTCGGGATTTATTTGCAAAGGCATACGAAGTGCTGTATTCGGGTTGCGGCGCTGCCGTTGGTGGCGGCAAGAGGAAGGTTTACAGAGGAGTGCGGCAGAGGCAATGGGGGAAATGGGTGGCGGAGATTCGACTGCCGCAGAATCGGATGAGGGTGTGGTTAGGAACATATGACTCGCCGGAGACCGCCGCCTATGCTTACGACTGCGCCGCCTGTAAGCTCCGAGGGGAATATGCTCGGTTGAATTTTCCAAATTTGAAGGATCTAAAGAGCGATTTAGGTAGCGATGAGTTTGTGAAATTGAGTGGGTTGAAAAAATTGGTGGATGCCAAAATTCAAGCGATTTTTCAGAAGATAAAGGGGAAGGGGAAGAAGAAGGATTGTCGGAGAATCGGCAGCGATTTAGGTTCGGGTTCGTGTTCTTCGTCGTCACCGTCGGTGTCTCTGCCTCCAGCGGTAGTGGAGATGACGGAGAAGTGGAGTTGGGAAAGGGTATCGGCTGTTGGTGCAGCGGAAGATGGGTTGTGGAACTTTGAGAACTCGCCTCGAGCTGGTTCAGTGGATTGCTTGACGGCGACGGCGACGGGATCGGAAACAGAGTGGTACTCGTTGGAGAAGATGCCTTCTTTTGATGCAGAGCAGATTTGGGATGTTCTTGCAATCTAG	900	50.56	METMTNRGTLQFTDVSTALSNLILTAGGNTLDSIFSHCDNFSRSVIDGVDFEQAVGSSVYLRQREVLQRFSQERKANGSRDLFAKAYEVLYSGCGAAVGGGKRKVYRGVRQRQWGKWVAEIRLPQNRMRVWLGTYDSPETAAYAYDCAACKLRGEYARLNFPNLKDLKSDLGSDEFVKLSGLKKLVDAKIQAIFQKIKGKGKKKDCRRIGSDLGSGSCSSSSPSVSLPPAVVEMTEKWSWERVSAVGAAEDGLWNFENSPRAGSVDCLTATATGSETEWYSLEKMPSFDAEQIWDVLAI	299

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	5406104	5407003	-	CmaCh02G009070.1	Cma02g00907	288658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma02g00907	299	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	9	298	-	-
	Cma02g00907	299	ProSiteProfiles	AP2/ERF domain profile.	105	162	IPR001471	GO:0003700\|GO:0006355
	Cma02g00907	299	Gene3D	AP2/ERF domain	105	163	IPR036955	GO:0003700\|GO:0006355
	Cma02g00907	299	PRINTS	Ethylene responsive element binding protein signature	106	117	IPR001471	GO:0003700\|GO:0006355
	Cma02g00907	299	PRINTS	Ethylene responsive element binding protein signature	144	164	IPR001471	GO:0003700\|GO:0006355
	Cma02g00907	299	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	9	298	-	-
	Cma02g00907	299	CDD	AP2	106	164	IPR001471	GO:0003700\|GO:0006355
	Cma02g00907	299	SMART	rav1_2	105	168	IPR001471	GO:0003700\|GO:0006355
	Cma02g00907	299	SUPERFAMILY	DNA-binding domain	105	162	IPR016177	GO:0003677
	Cma02g00907	299	Pfam	AP2 domain	105	155	IPR001471	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cma02g00907	Cma16g00550	CCT
	Cma02g00907	Cma15g01277	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma02g00907	Cma-Chr2:5406104	Cma16g00550	Cma-Chr16:2831656	1.65E-56	dispersed
	Cma15g01277	Cma-Chr15:8091619	Cma02g00907	Cma-Chr2:5406104	5.14E-132	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	34488	PF00847	AP2	3.80E-14	CL0081	Cma	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma02g00907	-		-	csv:101209624	381.719