Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00915 ATGAGGCTGATGAAGGTAGCAACGTGTAATTTGAATCAATGGGCCATGGATTTTGATTGTAATGTGAAGAACATCAAAGAGTCTATTGATGAGGCTAAACGTGCTGGCGCTGTCATCAGACTTGGCCCTGAACTCGAGATTACTGGATATGGCTGTGAAGACCATTTCTTGGAGCTCGACACTGTCATGCATGCATGGGAATGCTTGAAGGATATACTTTCGGGTCCTTTGACTGATGGGATATTGTGCAGCATTGGCATGCCTGTTATCAAGGACTCTGAGCGTTACAATTGTCAAGTGCTCTGTTTCAATAGGAAAATTGTTATGATACGTCCAAAAATGTGGCTTGCAAATGATGGGAATTACAGGGAGCTACGGTGGTTCACAGCATGGAAGCTAAAGGACAAGCTTGTGGATTTTCAGCTGCCAGGAGATATCTCTGAGGCTCTGTCACAAACATCTGTGCCTTTTGGCTATGGATATATTCAGTTTCTAGACACAACTGTTGCTGCTGAAGTTTGTGAAGAACTTTTTACACCTATTCCACCGCATGCTGAACTTGCTTTGAATGGGGTTGAAGTATTTATGAATGCTAGTGGAAGTCATCACCAACTAAGAAAACTTGATGTTCGTCTTCGTGCTTTTATAGATGCTACTCATACTCGCGGTGGAGTTTACATGTACAGTAATCACCAGGGTTGTGACGGTGGCCGTCTTTATTATGATGGTTGTGCTTGTGTTGTTATGAACGGCGAGCTTGTAGCTCAAGGGTCGCAGTTTTCCTTGAAGGATGTCGAGGTTGTGGTTGCTAGTGTAGATCTTGATGCGGTTGCTAGTCTTAGAGGATCTATAAGCAGCTTTCAAGAACAAGCAAGCTATAAGACCACAGTTCCTTCTGTGGCAGCCCCATATAGTCTATGTCAGCCATTCAATCTCAAAATTTCTCTTTCAAGTCCCCTTCAGATTAACTATCACTGCTCTGAAGAGGAAATAGCCTATGGACCTGGTTGCTGGTTGTGGGACTATTTAAGACGAAGCGGAGCTTCTGGATTTTTGCTTCCTCTTTCTGGTGGAGCTGATAGTTCATCTGTTGCAGCCATAGTGGGCTGCATGTGCCAGCTTGTCGTAAAAGATATTGCCAAGGGAGACGAACAAGTGAAAGCTGATGCAATACGGATTGGACATTATGCTGATGGAGAGTTCCCGACTGATAGTAAAGAATTCGCCAAACGAATTTTTTATACTGTATTTATGGGTTCTGAAAATAGTTCTGAAGCAACACGTACACGAGCAAAGGTTCTAGCAGACGAGATTGGTTCGTGGCATCTTGATGTTTCCATAGACGGGATTGTTTCTGCACTTTTGTCTTTGTTCCAAACAGTTACTGGAAAACGTCCACGGTATAAGTTAGATGGGGGATCTAACGTCGAAAATTTAGGCCTGCAGAATATTCAAGCTCGAATCAGGATGGTTCTGGCTTTTATGTTTGCATCGCTCTTACCTTGGGTACATGGTAAATCTGGATTCTACCTTGTTCTGGGTAGCTCCAACGTCGACGAAGGATTGCGTGGTTACTTGACGAAGATTCTCGACTGGAGTCAGTATGATTGCAGTTCAGCAGATCTAAATCCAATTGGAAGCATCAGTAAGCAGGATCTTCGAGCTTTTCTTAGATGGGCTGCCACGCATCTTGGCTTCTCATCGTTGGCAGATATCGAAGCAGCTCCTCCCACAGCCGAGCTGGAGCCAATTCGTTCCAACTACAGCCAGTTGGATGAAGTTGACATGGGAATGACATATGAGGAGCTCTCAGTCTACGGAAGGCTGCGAAAAATTTTCCGTTGCGGTCCTGTGTCAATGTTCAAGAATCTCTGCTACCGTTGGGGTTCTAAGTTAACTCCGTCAGAGGTGGCCGAAAAAGTGAAACATTTCTTCAAGTACTACTCCATGAATCGACACAAAATGGTCGTTCTAACGCCATCTTATCACGCTGAGAGCTATTCCCCGGATGACAATCGGTACGATCTTCGTCAATTTCTGTACAACTCGAGGTGGCCATATCAGTTTCGAAAGATGGATAATGTTGTGAAGGAGTTGAATGGAGACAGTATTGCTATTAAGGAACCAAGTGGGATGGGGGTTGTAGCAGCAGGATCAGGGAACCCCAATGTTGGAGTTTAG 2181 44.43 MRLMKVATCNLNQWAMDFDCNVKNIKESIDEAKRAGAVIRLGPELEITGYGCEDHFLELDTVMHAWECLKDILSGPLTDGILCSIGMPVIKDSERYNCQVLCFNRKIVMIRPKMWLANDGNYRELRWFTAWKLKDKLVDFQLPGDISEALSQTSVPFGYGYIQFLDTTVAAEVCEELFTPIPPHAELALNGVEVFMNASGSHHQLRKLDVRLRAFIDATHTRGGVYMYSNHQGCDGGRLYYDGCACVVMNGELVAQGSQFSLKDVEVVVASVDLDAVASLRGSISSFQEQASYKTTVPSVAAPYSLCQPFNLKISLSSPLQINYHCSEEEIAYGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIAKGDEQVKADAIRIGHYADGEFPTDSKEFAKRIFYTVFMGSENSSEATRTRAKVLADEIGSWHLDVSIDGIVSALLSLFQTVTGKRPRYKLDGGSNVENLGLQNIQARIRMVLAFMFASLLPWVHGKSGFYLVLGSSNVDEGLRGYLTKILDWSQYDCSSADLNPIGSISKQDLRAFLRWAATHLGFSSLADIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYRWGSKLTPSEVAEKVKHFFKYYSMNRHKMVVLTPSYHAESYSPDDNRYDLRQFLYNSRWPYQFRKMDNVVKELNGDSIAIKEPSGMGVVAAGSGNPNVGV 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5453010 5458241 + CmaCh02G009150.1 Cma02g00915 288666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00915 726 Pfam NAD synthase 338 606 IPR022310 -
Cma02g00915 726 PIRSF NADS_GAT 1 688 IPR014445 GO:0003952|GO:0005524|GO:0009435
Cma02g00915 726 Hamap Glutamine-dependent NAD(+) synthetase [nadE]. 4 686 IPR014445 GO:0003952|GO:0005524|GO:0009435
Cma02g00915 726 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 318 667 - -
Cma02g00915 726 Gene3D HUPs 327 701 IPR014729 -
Cma02g00915 726 CDD GAT_Gln-NAD-synth 5 292 - -
Cma02g00915 726 Pfam Carbon-nitrogen hydrolase 5 281 IPR003010 GO:0006807
Cma02g00915 726 PANTHER GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE 1 725 - -
Cma02g00915 726 SUPERFAMILY Carbon-nitrogen hydrolase 1 289 IPR036526 -
Cma02g00915 726 PANTHER NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE 1 725 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
Cma02g00915 726 Gene3D - 1 303 IPR036526 -
Cma02g00915 726 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 4 274 IPR003010 GO:0006807
Cma02g00915 726 CDD NAD_synthase 328 655 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00915 K01950 E6.3.5.1, NADSYN1, QNS1, nadE; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] - csv:101207747 1358.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01283 Cma-Chr15:8134769 Cma02g00915 Cma-Chr2:5453010 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g199 . . . . . . . . . . Cma02g00915 . Car02g00666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00922 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004159 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00915 Cma_Chr02 FPKM 11.871775 12.767012 16.853426 17.647488 10.39871 11.037155 10.468185 26.525475 25.532661 26.655914