Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00916 ATGGCTGGCTCCTGGAGAGCTCAAGGGTCTCTGATCGTACTGGCAATCGTTTTCTTCGGATGCCTGTCCGCAATTTCCATCGCGAAAGAGGAAGCGACTAAGTTGGGGACTGTCATTGGGATCGATTTGGGAACTACTTATTCTTGTGTTGGAGTCTACAAGAACGGTCATGTAGAAATTATAGCGAATGACCAAGGAAACCGTATCACCCCTTCTTGGGTCGCTTTCACTGATAGTGAAAGATTGATCGGTGAGGCTGCGAAGAATCAAGCAGCTGTCAACCCTGAAAGGACAGTCTTTGATGTCAAGAGACTTATTGGTAGAAAGTTTGATGATAAGGAAGTTCAGAAAGATATCAAGCTTTTTCCCTACAAGATTGTGAATAAGGATGGAAAGCCTTACATTCAAGTAAAGATCAAGGATGGTGAGACTAAGGTTTTCAGCCCTGAGGAAATCAGTGCTATGATTCTCACAAAGATGAAAGAAACAGCCGAAGCATTCCTTGGCAAGAAGATTAAGGACGCCGTCGTCACTGTTCCAGCTTACTTCAACGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCTAGGATCATCAACGAGCCCACTGCGGCCGCCATTGCGTATGGTTTGGACAAGAAAGGCGGTGAAAAGAACATTCTTGTATTTGATCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACTATTGACAATGGTGTTTTTGAGGTTCTTGCCACAAACGGAGATACTCACTTGGGAGGTGAGGACTTTGACCAGAGGATCATGGAATACTTCATCAAATTGATCAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTTAGAAGGGAATGTGAGCGTGCCAAGAGGGCATTGAGTAGCCAGCACCAGGTCCGCGTTGAGATTGAATCCCTCTTCGATGGTACTGACTTCTCTGAGCCATTGACCAGGGCTCGATTTGAGGAGTTGAACAACGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAGGCCATGGAAGATGCAGGCTTAGAAAAGAGCCAAATCGATGAGATCGTTCTTGTTGGTGGTAGCACCAGGATTCCTAAAGTTCAACAGCTTCTAAAAGACTACTTTGACGGCAAGGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCCTATGGTGCTGCTGTTCAAGGAAGCATCTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGATATTCTTCTTCTTGACGTTGCCCCTCTTACTCTTGGAATTGAGACTGTTGGTGGAGTGATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACCAAAAAATCTCAGGTCTTCACCACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGGTCTTCGAAGGTGAGAGGAGTCTCACTAAGGACTGTAGGAACCTTGGGAAATTCGATCTAACTGGAATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTTGATGCCAACGGTATCCTGAATGTTAAGGCCGAAGACAAGGGCACTGGTAAATCCGAGAAGATCACCATCACCAATGACAAGGGTCGATTGAGCCAAGAGGAGATCGACCGGATGGTTCGTGAAGCCGAGGAGTTTGCTGAGGAGGACAAGAAGGTGAAGGAAAGAATTGACGCCCGTAACAGCCTGGAAACTTATGTGTACAACATGAAGAACCAGATCAATGACAAAGACAAACTTGCCGACAAGCTCGAGTCTGATGAGAAGGAGAAGATAGAGACTGCCGTTAAGGACGCTCTCGAATGGCTGGACGACAACCAGAGTGCCGAGAAGGAAGACTATGAGGAGAAGCTGAAGGAGGTGGAGGCCGTCTGCAACCCCATCATCACGGCTGTTTACCAAAGGTCTGGTGGTGCCCCAGGGGCTGGGGAGTCGGCGGAAGATGATGAGTCTCACGATGAGCTCTAA 2001 47.68 MAGSWRAQGSLIVLAIVFFGCLSAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFDDKEVQKDIKLFPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKDALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGESAEDDESHDEL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5458204 5462977 - CmaCh02G009160.1 Cma02g00916 288667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00916 666 ProSitePatterns Heat shock hsp70 proteins family signature 2. 229 242 IPR018181 -
Cma02g00916 666 Gene3D Actin; Chain A, domain 4 261 344 - -
Cma02g00916 666 Gene3D - 39 410 - -
Cma02g00916 666 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 417 571 IPR029047 -
Cma02g00916 666 Gene3D - 572 646 IPR029048 -
Cma02g00916 666 PANTHER LUMINAL-BINDING PROTEIN 23 653 - -
Cma02g00916 666 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 652 IPR029048 -
Cma02g00916 666 ProSitePatterns Heat shock hsp70 proteins family signature 1. 41 48 IPR018181 -
Cma02g00916 666 Coils Coil 581 601 - -
Cma02g00916 666 PANTHER HEAT SHOCK PROTEIN 70KDA 23 653 IPR013126 GO:0005524|GO:0140662
Cma02g00916 666 Gene3D - 221 395 - -
Cma02g00916 666 Coils Coil 285 305 - -
Cma02g00916 666 MobiDBLite consensus disorder prediction 645 666 - -
Cma02g00916 666 ProSitePatterns Heat shock hsp70 proteins family signature 3. 366 380 IPR018181 -
Cma02g00916 666 Coils Coil 615 635 - -
Cma02g00916 666 Pfam Hsp70 protein 38 645 IPR013126 GO:0005524|GO:0140662
Cma02g00916 666 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cma02g00916 666 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 418 575 IPR029047 -
Cma02g00916 666 Coils Coil 547 567 - -
Cma02g00916 666 CDD HSPA5-like_NBD 36 410 IPR042050 -
Cma02g00916 666 SUPERFAMILY Actin-like ATPase domain 223 414 IPR043129 -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 37 50 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 65 77 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 87 95 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 175 195 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 235 245 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 363 379 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 395 415 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 422 441 - -
Cma02g00916 666 PRINTS 70kDa heat shock protein signature 503 519 - -
Cma02g00916 666 SUPERFAMILY Actin-like ATPase domain 36 220 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00916 Cma-Chr2:5458204 Cma07g00975 Cma-Chr7:4720388 0 dispersed
Cma15g01445 Cma-Chr15:9147002 Cma02g00916 Cma-Chr2:5458204 0 dispersed
Cma15g01284 Cma-Chr15:8141692 Cma02g00916 Cma-Chr2:5458204 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00916 K09490 - zju:107429814 1269.99